Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   R8623_RS06185 Genome accession   NZ_AP026928
Coordinates   1224613..1226361 (-) Length   582 a.a.
NCBI ID   WP_000828849.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700406     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1219613..1231361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8623_RS06160 (PC0401_12060) - 1220745..1220882 (-) 138 WP_000807141.1 hypothetical protein -
  R8623_RS06165 (PC0401_12070) - 1221084..1221671 (-) 588 WP_000821280.1 CPBP family intramembrane glutamic endopeptidase -
  R8623_RS06170 (PC0401_12080) rplL 1221858..1222226 (-) 369 WP_001196960.1 50S ribosomal protein L7/L12 -
  R8623_RS06175 (PC0401_12090) rplJ 1222302..1222802 (-) 501 WP_001287278.1 50S ribosomal protein L10 -
  R8623_RS06180 (PC0401_12100) - 1223052..1224311 (-) 1260 WP_001820727.1 TRZ/ATZ family protein -
  R8623_RS06185 (PC0401_12110) rcrQ 1224613..1226361 (-) 1749 WP_000828849.1 ABC transporter ATP-binding protein Regulator
  R8623_RS06190 (PC0401_12120) - 1226363..1228087 (-) 1725 WP_000681691.1 ABC transporter ATP-binding protein -
  R8623_RS06195 (PC0401_12130) msrB 1228145..1229083 (-) 939 WP_000818207.1 peptide-methionine (R)-S-oxide reductase MsrB -
  R8623_RS06200 (PC0401_12140) - 1229150..1229302 (-) 153 WP_317649471.1 hypothetical protein -
  R8623_RS06205 (PC0401_12150) thrB 1229378..1230247 (-) 870 WP_000692438.1 homoserine kinase -

Sequence

Protein


Download         Length: 582 a.a.        Molecular weight: 64899.45 Da        Isoelectric Point: 7.3120

>NTDB_id=83056 R8623_RS06185 WP_000828849.1 1224613..1226361(-) (rcrQ) [Streptococcus pneumoniae strain PZ900700406]
MKRQTVNQTLKRLVVDLANHPFLLFLAFLGTIAQVGLSIYLPILIGQVIDQVLVAGSSPVFWQIFLQMLLVVIGNTLVQW
ANPLLYNRLIFSYTRDLRERIIHKLHRLPIAFADRQGNGEMVSRVTTDIEQLAAGLTMIFNQFFIGVLMILVSILAMLQI
HLLMTLLVLLLTPLSMVISRFIAKRSYHLFQKQTETRGIQTQLIEESLSQQTIIQSFNAQTEFIQRLREAHDNYSGYSQS
AIFYSSTVNPSTRFVNALIYALLAGVGAYRIMMGSTLTVGRLVTFLNYVQQYTKPFNDISSVLAELQSALACVERIYGVL
DSPEVAETGKEVLTSDQVKGAISFKHVSFGYHPEKILIKDLSIDIPAGSKVAIVGPTGAGKSTLINLLMRFYPISSGDIL
LDGQSIYDYTRVSLRQQFGMVLQETWLTQGIIHDNIAFGNPEASREQVIAAAKAANADFFIQQLPQGYDTKLENAGESLS
VGQAQLLTIARVFLAIPKILILDEATSSIDTRTEVLVQDAFAKLMKGRTSFIIAHRLSTIQDADLILVLVDGDIVEYGNH
QELMDRKGKYYQMQKAAAFSSE

Nucleotide


Download         Length: 1749 bp        

>NTDB_id=83056 R8623_RS06185 WP_000828849.1 1224613..1226361(-) (rcrQ) [Streptococcus pneumoniae strain PZ900700406]
ATGAAACGACAAACTGTAAACCAGACGCTCAAACGTTTAGTCGTAGATTTAGCAAACCATCCCTTCCTCCTTTTCCTAGC
CTTTCTAGGAACTATTGCCCAAGTTGGCTTATCAATTTACCTACCTATTCTGATTGGGCAGGTCATTGACCAAGTCCTAG
TGGCTGGTTCATCACCAGTTTTTTGGCAGATTTTTCTCCAGATGCTCTTGGTGGTAATAGGAAATACTCTGGTACAATGG
GCCAATCCTCTCCTCTATAATCGTCTAATCTTCTCTTATACCAGAGATTTACGAGAGCGAATCATCCATAAACTCCATCG
GTTACCGATTGCTTTTGCGGATCGGCAAGGCAATGGAGAGATGGTCAGTCGTGTAACCACGGATATCGAACAGTTGGCAG
CTGGCTTGACCATGATTTTTAACCAATTTTTCATTGGTGTTTTGATGATTTTGGTTAGTATTCTAGCCATGCTCCAAATT
CATCTCCTCATGACTCTCTTAGTCTTGCTGTTGACGCCACTGTCCATGGTGATTTCACGCTTTATTGCCAAGAGATCCTA
TCATCTCTTCCAGAAGCAAACAGAGACGAGGGGAATTCAGACTCAGTTGATTGAAGAATCGCTTAGCCAGCAGACTATAA
TCCAGTCCTTCAATGCTCAAACAGAATTTATCCAAAGATTGCGTGAGGCTCATGACAACTACTCAGGCTATTCTCAGTCA
GCCATCTTTTATTCTTCAACGGTCAATCCTTCGACTCGCTTTGTAAATGCACTCATTTATGCCCTTTTAGCTGGAGTAGG
AGCTTATCGTATCATGATGGGTTCAACCTTGACTGTCGGTCGTTTAGTGACTTTTTTGAACTATGTTCAGCAATACACCA
AGCCCTTTAACGATATTTCTTCAGTGCTAGCTGAGTTGCAAAGTGCTCTGGCTTGCGTAGAGCGTATCTATGGAGTCTTA
GATAGCCCTGAAGTGGCTGAAACAGGTAAGGAAGTCTTGACCAGTGACCAAGTTAAGGGAGCTATTTCCTTTAAACATGT
CTCTTTTGGCTACCATCCTGAAAAAATTTTGATTAAGGACTTGTCTATCGATATTCCAGCTGGTAGTAAGGTAGCCATCG
TTGGTCCGACAGGTGCTGGAAAATCAACTCTTATCAATCTCCTTATGCGTTTTTATCCCATTAGCTCGGGAGATATCTTG
CTGGATGGGCAATCCATTTATGATTATACACGAGTATCATTGAGACAGCAGTTTGGTATGGTGCTTCAAGAAACCTGGCT
CACACAAGGGATCATTCATGATAATATTGCCTTTGGCAATCCTGAAGCCAGTCGAGAGCAAGTAATTGCTGCTGCCAAAG
CAGCTAATGCAGACTTTTTCATCCAACAGTTGCCACAGGGATACGATACCAAGTTGGAAAATGCTGGAGAATCTCTCTCT
GTCGGCCAAGCTCAGCTCTTGACCATAGCCCGAGTCTTTCTGGCTATTCCAAAGATTCTTATCTTAGACGAGGCAACTTC
TTCCATTGATACACGGACAGAAGTGCTGGTACAGGATGCCTTTGCAAAACTCATGAAGGGCCGCACAAGCTTCATCATTG
CTCACCGTTTGTCGACCATTCAGGATGCGGATTTAATTCTTGTCTTAGTAGATGGTGATATTGTTGAATATGGTAACCAT
CAAGAACTCATGGATAGAAAGGGTAAGTATTACCAAATGCAAAAAGCTGCGGCTTTTAGTTCTGAATAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(24-295)

ABC transporter (ABC_tran)

(359-507)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

37.367

96.564

0.361

Multiple sequence alignment