Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   QLH34_RS16510 Genome accession   NZ_CP125279
Coordinates   3256855..3257499 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain FLU-1     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3251855..3262499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLH34_RS16475 (QLH34_16475) - 3253034..3253465 (+) 432 WP_007408670.1 Na(+)/H(+) antiporter subunit B -
  QLH34_RS16480 (QLH34_16480) - 3253465..3253806 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  QLH34_RS16485 (QLH34_16485) - 3253799..3255286 (+) 1488 WP_072589517.1 Na+/H+ antiporter subunit D -
  QLH34_RS16490 (QLH34_16490) - 3255292..3255768 (+) 477 WP_218791341.1 Na+/H+ antiporter subunit E -
  QLH34_RS16495 (QLH34_16495) - 3255768..3256052 (+) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  QLH34_RS16500 (QLH34_16500) mnhG 3256036..3256410 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  QLH34_RS16505 (QLH34_16505) - 3256450..3256833 (-) 384 WP_012118312.1 hotdog fold thioesterase -
  QLH34_RS16510 (QLH34_16510) comA 3256855..3257499 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  QLH34_RS16515 (QLH34_16515) comP 3257580..3259886 (-) 2307 WP_015240483.1 sensor histidine kinase Regulator
  QLH34_RS16520 (QLH34_16520) comX 3259905..3260081 (-) 177 WP_015240484.1 competence pheromone ComX -
  QLH34_RS16525 (QLH34_16525) - 3260096..3260971 (-) 876 WP_025285191.1 polyprenyl synthetase family protein -
  QLH34_RS16530 (QLH34_16530) degQ 3261123..3261263 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  QLH34_RS16535 (QLH34_16535) - 3261728..3262069 (+) 342 WP_124692757.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=830522 QLH34_RS16510 WP_003152052.1 3256855..3257499(-) (comA) [Bacillus velezensis strain FLU-1]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=830522 QLH34_RS16510 WP_003152052.1 3256855..3257499(-) (comA) [Bacillus velezensis strain FLU-1]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGACAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCAATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864