Detailed information NTG0830472

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: QLH34_RS01975
• Genome accession: NZ_CP125279
• Coordinates: 390223..391371 (+)
• Length: 382 a.a.
• NCBI ID: WP_007410270.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain FLU-1
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 385223..396371

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QLH34_RS01955 (QLH34_01955)	-	385620..386303 (-)	684	WP_099566393.1	ABC transporter ATP-binding protein	-
QLH34_RS01960 (QLH34_01960)	-	386318..387754 (-)	1437	WP_218791486.1	ABC transporter permease	-
QLH34_RS01965 (QLH34_01965)	-	387967..388650 (+)	684	WP_007410267.1	response regulator transcription factor	-
QLH34_RS01970 (QLH34_01970)	-	388637..390070 (+)	1434	WP_162492834.1	HAMP domain-containing sensor histidine kinase	-
QLH34_RS01975 (QLH34_01975)	rapC	390223..391371 (+)	1149	WP_007410270.1	Rap family tetratricopeptide repeat protein	Regulator
QLH34_RS01980 (QLH34_01980)	phrC	391355..391474 (+)	120	WP_033575081.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
QLH34_RS01985 (QLH34_01985)	-	391623..391718 (-)	96	WP_012116800.1	YjcZ family sporulation protein	-
QLH34_RS01990 (QLH34_01990)	-	391813..393177 (-)	1365	WP_052827044.1	aspartate kinase	-
QLH34_RS01995 (QLH34_01995)	ceuB	393591..394544 (+)	954	WP_012116802.1	ABC transporter permease	Machinery gene
QLH34_RS02000 (QLH34_02000)	-	394534..395481 (+)	948	WP_007410274.1	iron chelate uptake ABC transporter family permease subunit	-
QLH34_RS02005 (QLH34_02005)	-	395475..396233 (+)	759	WP_003156330.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 45475.70 Da
• Isoelectric Point: 4.9916

>NTDB_id=830472 QLH34_RS01975 WP_007410270.1 390223..391371(+) (rapC) [Bacillus velezensis strain FLU-1]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDHMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEET
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide

• Length: 1149 bp

>NTDB_id=830472 QLH34_RS01975 WP_007410270.1 390223..391371(+) (rapC) [Bacillus velezensis strain FLU-1]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTATCGATACATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCATATGGAGCCTGATTCGAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAAGGGCTTCTCGATTATTACGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATCTCAGCGATTACATATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCACGTGGAACGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTAGAGCAGGACACATATAACGTCCGGATCATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGCGCTTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTACTACAATCAGGACCGCATCGGC
GAAGCGATTCCGTACTTTGAACGGGCGGTCGATACATTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
TCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGAAAAAGCGTCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTACACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAACA
ATCAGTGCGTGTTTCCGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAAATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_12) (223-294)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	82.461	100	0.825
rapF	Bacillus subtilis subsp. subtilis str. 168	57.105	99.476	0.568