Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   QLH34_RS00250 Genome accession   NZ_CP125279
Coordinates   45515..45805 (-) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus velezensis strain FLU-1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 40515..50805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLH34_RS00210 (QLH34_00210) darA 40532..40861 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  QLH34_RS00215 (QLH34_00215) - 40874..41314 (+) 441 WP_004264730.1 DUF327 family protein -
  QLH34_RS00220 (QLH34_00220) holB 41326..42315 (+) 990 WP_007409919.1 DNA polymerase III subunit delta' -
  QLH34_RS00225 (QLH34_00225) ricT 42318..43145 (+) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  QLH34_RS00230 (QLH34_00230) yabA 43160..43519 (+) 360 WP_004264720.1 replication initiation-control protein YabA -
  QLH34_RS00235 (QLH34_00235) - 43580..44323 (+) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  QLH34_RS00240 (QLH34_00240) - 44310..44609 (+) 300 WP_007409921.1 GIY-YIG nuclease family protein -
  QLH34_RS00245 (QLH34_00245) rsmI 44584..45465 (+) 882 WP_122503654.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  QLH34_RS00250 (QLH34_00250) abrB 45515..45805 (-) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  QLH34_RS00255 (QLH34_00255) metG 46289..48280 (+) 1992 WP_218791441.1 methionine--tRNA ligase -
  QLH34_RS00260 (QLH34_00260) - 48356..49123 (+) 768 WP_015239022.1 TatD family hydrolase -
  QLH34_RS00265 (QLH34_00265) - 49258..50583 (+) 1326 WP_023356663.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=830465 QLH34_RS00250 WP_169510469.1 45515..45805(-) (abrB) [Bacillus velezensis strain FLU-1]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=830465 QLH34_RS00250 WP_169510469.1 45515..45805(-) (abrB) [Bacillus velezensis strain FLU-1]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979