Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   OH685_RS11255 Genome accession   NZ_CP125227
Coordinates   2387007..2387387 (+) Length   126 a.a.
NCBI ID   WP_282463116.1    Uniprot ID   -
Organism   Acinetobacter pittii strain SO1     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2382007..2392387
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH685_RS11225 (OH685_11345) kdsB 2382913..2383674 (+) 762 WP_282463113.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  OH685_RS11230 (OH685_11350) holB 2383688..2384668 (+) 981 WP_282463114.1 DNA polymerase III subunit delta' -
  OH685_RS11235 (OH685_11355) pilZ 2384679..2385020 (+) 342 WP_002121335.1 PilZ domain-containing protein -
  OH685_RS11240 (OH685_11360) ycfH 2385038..2385811 (+) 774 WP_282463115.1 TatD family hydrolase -
  OH685_RS11245 (OH685_11365) - 2385848..2386456 (+) 609 WP_005069536.1 TetR/AcrR family transcriptional regulator -
  OH685_RS11250 (OH685_11370) - 2386463..2387017 (+) 555 WP_068527582.1 type II secretion system protein -
  OH685_RS11255 (OH685_11375) xcpV 2387007..2387387 (+) 381 WP_282463116.1 type II secretion system minor pseudopilin GspI Machinery gene
  OH685_RS11260 (OH685_11380) xcpW 2387387..2388142 (+) 756 WP_282463117.1 type II secretion system minor pseudopilin GspJ Machinery gene
  OH685_RS11265 (OH685_11385) gspK 2388143..2389102 (+) 960 WP_282463118.1 type II secretion system minor pseudopilin GspK -
  OH685_RS11270 (OH685_11390) - 2389331..2389927 (+) 597 WP_017386831.1 6-carboxytetrahydropterin synthase -
  OH685_RS11275 (OH685_11395) ung 2389981..2390694 (+) 714 WP_005069527.1 uracil-DNA glycosylase -
  OH685_RS11280 (OH685_11400) hibch 2390691..2391815 (+) 1125 WP_014206599.1 enoyl-CoA hydratase/isomerase family protein -
  OH685_RS11285 (OH685_11405) tadA 2391821..2392324 (+) 504 WP_274860609.1 tRNA adenosine(34) deaminase TadA -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 14050.29 Da        Isoelectric Point: 9.4463

>NTDB_id=830456 OH685_RS11255 WP_282463116.1 2387007..2387387(+) (xcpV) [Acinetobacter pittii strain SO1]
MKFKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEIALMEINQEWLEGTQSKQITSQGETWQI
DKSAQSTISPNVQKVDLQISLYDSDKGKVQNGITHLVFFNYPMKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=830456 OH685_RS11255 WP_282463116.1 2387007..2387387(+) (xcpV) [Acinetobacter pittii strain SO1]
ATGAAATTTAAAGGCTTTACTCTATTAGAAGTAATGGTTGCTTTAGCAATTTTTGCAGTGGCGGCTGTCGCGTTAACTAA
AGTAGCCATGCAATATACTCAATCTACCTCAAATGCAATTCTTAGAACAAAAGCTCAGTTTGTGGCAATGAATGAAATTG
CTTTAATGGAGATAAATCAGGAATGGCTTGAAGGTACTCAAAGTAAGCAAATTACTTCTCAAGGCGAAACTTGGCAGATT
GACAAATCTGCACAATCTACAATTAGCCCGAATGTTCAGAAAGTAGATTTACAAATTAGCTTATATGATTCTGATAAGGG
CAAAGTTCAAAATGGTATTACTCACTTGGTATTTTTTAATTATCCAATGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

92.063

100

0.921