Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   OH685_RS03945 Genome accession   NZ_CP125227
Coordinates   805531..806943 (-) Length   470 a.a.
NCBI ID   WP_206243321.1    Uniprot ID   A0AAW8QCV8
Organism   Acinetobacter pittii strain SO1     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 800531..811943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH685_RS03930 (OH685_03965) lptG 801583..802653 (+) 1071 WP_002121203.1 LPS export ABC transporter permease LptG -
  OH685_RS03935 (OH685_03970) gpmI 802780..804327 (+) 1548 WP_282463820.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  OH685_RS03940 (OH685_03975) ctpA 804343..805527 (+) 1185 WP_002121269.1 S41 family peptidase -
  OH685_RS03945 (OH685_03980) pilR 805531..806943 (-) 1413 WP_206243321.1 sigma-54 dependent transcriptional regulator Regulator
  OH685_RS03950 (OH685_03985) pilS 806967..808535 (-) 1569 WP_202744975.1 PAS domain-containing sensor histidine kinase Regulator
  OH685_RS03955 (OH685_03990) gacA 808546..809181 (-) 636 WP_002121174.1 response regulator -
  OH685_RS03960 (OH685_03995) pbpG 809394..810440 (+) 1047 WP_141690933.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  OH685_RS03965 (OH685_04000) thrC 810550..811689 (-) 1140 WP_002048893.1 threonine synthase -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 52698.81 Da        Isoelectric Point: 6.3445

>NTDB_id=830437 OH685_RS03945 WP_206243321.1 805531..806943(-) (pilR) [Acinetobacter pittii strain SO1]
MAEQQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKQLFTQFHYDACLTDLNLPDGSGLELVQHVSQTYPHTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPINQIHLDQLLKKALNQPKPEHEFGETILENDLLIGRSPPIQNLRTAIKKIARS
QAPVFVTGESGTGKEVVANLIHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLSMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLDLLVQQGKFRQDLFFRIHVMDIMLPPLRDRGGDILL
LANHFIQKVCTEWGISSKQLTASAETYLLQQDFPGNVRELRNMIERAITLSDDECIDLTHLAPPLRSSSVSPQIVTKQLN
QTPTVQTHPKFPMEGLERYLENIEKDILLNALNMTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTEMGEEV

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=830437 OH685_RS03945 WP_206243321.1 805531..806943(-) (pilR) [Acinetobacter pittii strain SO1]
ATGGCAGAACAGCAACCACTCGTTTTGCTTGTAGACGATGAAGAAGATTTGTGCCTGTTAATGCAAATGACTCTTGCACG
AATGGGGATTAAGACACATCTTGCTTATCGGGTTGAACAGGCCAAACAGCTTTTTACTCAGTTTCATTACGATGCATGCT
TGACCGATTTAAATCTACCTGACGGTAGTGGTTTAGAATTGGTTCAACATGTTTCTCAAACTTACCCACACACTCCCATT
GCAGTCTTAACTGCATACGGCAATATGGATATTGCAATTGCAGCATTAAAAGCGGGAGCTTTTGATTTTGTCAGCAAACC
TATTAACCAAATTCACTTAGATCAGTTGTTAAAAAAGGCGCTCAACCAGCCAAAACCAGAGCATGAGTTCGGTGAAACAA
TATTAGAAAATGACTTATTAATTGGCCGTTCACCACCTATACAAAACTTACGGACAGCTATTAAAAAAATAGCCCGCTCC
CAAGCTCCTGTATTTGTTACAGGCGAATCTGGTACGGGTAAAGAAGTTGTTGCTAATCTAATTCACCGCTTAAGCAACCG
CAGTGAAGGACCATTTATTGCAATTAACTGTGGAGCAATCCCAACTGAGCTCATGGAAAGTGAACTTTTCGGGCATAAAA
AAGGCAGTTTTACTGGAGCAACCCAAGACAAACAAGGTCTTATTTTATCGGCACACGGCGGCAGTTTATTTTTAGATGAA
ATTGCCGAATTGCCTTTAAGTATGCAAGTTAAATTGCTTCGGGCAGTACAAGAGAAAAAGATTCGCCCTGTAGGTTCAGA
TCAGGAAATTGATGTTGATTTTCGAGTAATCAGTGCGAGTCACCAAGACTTAGATTTATTAGTTCAACAAGGTAAATTCC
GTCAGGACTTATTTTTCCGTATTCATGTTATGGATATTATGCTGCCGCCACTGCGTGACCGTGGTGGAGATATTTTGCTA
TTGGCCAATCATTTTATTCAAAAGGTTTGTACGGAATGGGGAATTTCAAGCAAGCAATTAACGGCGAGCGCTGAAACTTA
CTTATTGCAGCAAGACTTTCCGGGTAATGTTCGTGAATTAAGAAATATGATTGAACGAGCTATTACTTTAAGTGATGATG
AGTGCATTGATTTGACACACTTAGCTCCTCCTCTTAGAAGTAGTAGTGTGAGCCCGCAAATCGTAACGAAACAACTAAAT
CAAACACCGACTGTTCAGACTCACCCAAAATTTCCAATGGAAGGTTTAGAACGCTACTTAGAAAATATCGAAAAAGATAT
TTTACTGAATGCTCTGAACATGACGCATTGGAATCGAACTTTAGCGGCTAAAAAGTTAGGAATGACTTTCCGTTCTTTGC
GCTATCGACTCAAAAAGTTTGGCTTAGATACTGAAATGGGAGAGGAAGTATAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(420-460)

Response regulator receiver domain (Response_reg)

(8-116)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

85.835

100

0.864
  pilR Pseudomonas aeruginosa PAK

51.096

97.021

0.496