Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   OH685_RS00275 Genome accession   NZ_CP125227
Coordinates   52849..53733 (-) Length   294 a.a.
NCBI ID   WP_282463622.1    Uniprot ID   -
Organism   Acinetobacter pittii strain SO1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 47849..58733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH685_RS00260 (OH685_00260) miaB 49734..51185 (+) 1452 WP_002119558.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  OH685_RS00265 (OH685_00265) phoL 51223..52311 (+) 1089 WP_002119513.1 PhoH family protein -
  OH685_RS00270 (OH685_00270) ybeY 52321..52797 (+) 477 WP_282463621.1 rRNA maturation RNase YbeY -
  OH685_RS00275 (OH685_00275) tonB2 52849..53733 (-) 885 WP_282463622.1 TonB family protein Machinery gene
  OH685_RS00280 (OH685_00280) - 53966..54637 (+) 672 WP_282463623.1 hypothetical protein -
  OH685_RS00285 (OH685_00285) - 54796..55509 (+) 714 WP_002119525.1 DUF3108 domain-containing protein -
  OH685_RS00290 (OH685_00290) xpt 55582..56157 (+) 576 WP_002119547.1 xanthine phosphoribosyltransferase -
  OH685_RS00295 (OH685_00295) wrbA 56210..56812 (-) 603 WP_282463624.1 NAD(P)H:quinone oxidoreductase -
  OH685_RS00300 (OH685_00300) - 57174..58421 (+) 1248 WP_002119535.1 YihY family inner membrane protein -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33693.24 Da        Isoelectric Point: 8.4692

>NTDB_id=830417 OH685_RS00275 WP_282463622.1 52849..53733(-) (tonB2) [Acinetobacter pittii strain SO1]
MLNKRSLSIEPFHHWWQDRVFIAATILAILLHIFVLLIHFAMPSPSEQSTKEIAISIRPSNEPVHQADFLAQADQQGSGA
FREAHRTSSDTPNPRLNDASTGDTELESLQKIHQQRELKFEEKVLMTVLSWKKQADASQRKKELEQLQSQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKDASAIYLDKFREKVELYGNRYYPEEAKQQQLRGEVRLMVILNAQGGIRAIRL
LESSGHSILDEAAKSSVRRGAPFGHFDANMKDISELRIVRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=830417 OH685_RS00275 WP_282463622.1 52849..53733(-) (tonB2) [Acinetobacter pittii strain SO1]
ATGTTGAACAAAAGAAGTTTATCCATAGAGCCTTTTCATCATTGGTGGCAAGACCGAGTCTTTATTGCCGCAACAATATT
GGCAATCTTACTGCATATTTTTGTATTGCTCATTCACTTTGCCATGCCTAGCCCCTCAGAGCAATCTACTAAAGAAATTG
CAATTTCAATTCGGCCAAGCAATGAGCCAGTTCATCAGGCAGATTTTTTGGCACAAGCAGATCAGCAAGGCTCGGGCGCA
TTTCGTGAAGCTCATCGGACTTCTAGTGATACTCCAAATCCGAGGCTCAATGATGCTTCAACTGGAGATACTGAGTTAGA
AAGTTTGCAAAAGATTCATCAACAAAGAGAGCTTAAATTTGAAGAAAAAGTTTTAATGACGGTTTTGAGTTGGAAGAAAC
AAGCGGATGCAAGCCAAAGAAAAAAAGAACTAGAACAACTACAAAGTCAATTTCAAGCAAAAGCTGCCATGGTTGCAAGC
CTTGAAGCACAATATTTGCAACGCCAACAAGATTTCAGCCGTCAGCAAAAAATTAAAACAGTAGATGGTATTCAAGCAAA
GAAAGATGCTTCAGCTATTTATTTAGATAAATTTCGTGAAAAAGTAGAGCTTTACGGTAATCGCTATTATCCTGAAGAAG
CCAAACAGCAACAGCTAAGAGGTGAAGTGCGTTTAATGGTTATTTTGAATGCTCAAGGCGGAATTCGTGCAATCCGTCTG
CTTGAAAGTTCAGGGCATTCAATACTAGACGAAGCAGCGAAGTCTTCAGTACGCCGCGGCGCACCATTTGGGCATTTTGA
TGCGAATATGAAAGATATTTCGGAGTTGCGTATTGTACGTACTTGGCGTTTTGACCCAGCTGAAGCTGAATTTGAGGTTC
ACTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

87.415

100

0.874