Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   QMA75_RS17505 Genome accession   NZ_CP125225
Coordinates   3634926..3636494 (+) Length   522 a.a.
NCBI ID   WP_282992801.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain EGA10     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3629926..3641494
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMA75_RS17485 (QMA75_17485) - 3630418..3631719 (+) 1302 WP_000805827.1 homoserine dehydrogenase -
  QMA75_RS17490 (QMA75_17490) thrC 3631775..3632914 (+) 1140 WP_000063593.1 threonine synthase -
  QMA75_RS17495 (QMA75_17495) pbpG 3633021..3634067 (-) 1047 WP_003384760.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  QMA75_RS17500 (QMA75_17500) - 3634280..3634915 (+) 636 WP_000633799.1 response regulator -
  QMA75_RS17505 (QMA75_17505) pilS 3634926..3636494 (+) 1569 WP_282992801.1 PAS domain-containing sensor histidine kinase Regulator
  QMA75_RS17510 (QMA75_17510) pilR 3636519..3637940 (+) 1422 WP_000840549.1 sigma-54 dependent transcriptional regulator Regulator
  QMA75_RS17515 (QMA75_17515) - 3637944..3639128 (-) 1185 WP_000942504.1 S41 family peptidase -
  QMA75_RS17520 (QMA75_17520) gpmI 3639144..3640691 (-) 1548 WP_000128749.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59211.81 Da        Isoelectric Point: 6.7325

>NTDB_id=830410 QMA75_RS17505 WP_282992801.1 3634926..3636494(+) (pilS) [Acinetobacter baumannii strain EGA10]
MQFPLNSSLSHTIFRLGTWYGLYRLIIAVSLNIILVLTDAQTDNSLQQPALYSYTLLGYSLLSLVQLLCFKFIATQATRQ
LILFFIVDIICLSLLTFSVGEPNLQLSLLYVIAIFTSAILLSARMSLLITLLAVIAVIYQRFVGSLFDYNNLNTIGNSAL
LAFLFFVVHGIGQIAVRRFKLLEALTFHQSIELYQLQNINRYILEQIEEGYLVLDENYDIVVSNPAACSLLGIPPQFANE
KYPLAKWHADLFEILKFGDLKEGDRFIFESRLSAYSINIKVQHLLVPQQTLTLLILQDAQQINQQAQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELLKDSDPEQQNTLRHMIGKQTKRIDSIVQDTLGLARSERTHPIQIDVKHFIVTLLEEDLFDVK
HSIQLKISDSSLKFLFDEKQLRQVMINLVRNALRHNAPDSPYITINIHSQTNKIYIDVIDYGEGVSKRDISQLFKPFFST
EINGTGLGLYLSHSFCEANHAKLTYVEQKQGACFRIECPIIY

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=830410 QMA75_RS17505 WP_282992801.1 3634926..3636494(+) (pilS) [Acinetobacter baumannii strain EGA10]
ATGCAATTTCCCTTAAATTCATCCTTGTCCCATACGATTTTTCGTTTGGGCACTTGGTATGGCTTATACCGTCTTATTAT
TGCGGTTAGCCTGAATATTATTTTGGTTTTAACCGATGCGCAAACTGATAACAGTTTGCAGCAACCTGCCTTATATTCCT
ACACACTACTCGGGTATTCCCTCTTAAGTCTTGTTCAGCTGTTATGCTTTAAATTTATTGCTACTCAAGCCACGCGACAG
CTTATTTTATTTTTTATTGTTGATATTATTTGTTTGAGTTTACTGACTTTTTCTGTGGGTGAACCAAATTTACAACTCAG
CTTACTCTATGTAATTGCCATCTTTACCTCGGCGATTTTACTTAGCGCAAGAATGTCTTTGCTGATTACATTGCTTGCGG
TTATCGCTGTTATTTACCAACGATTTGTAGGTAGTCTATTTGACTATAACAATCTAAATACTATTGGTAATAGCGCTCTC
TTAGCTTTCTTATTTTTTGTGGTTCACGGTATTGGCCAAATTGCTGTGCGGCGCTTTAAATTACTTGAAGCACTCACCTT
TCACCAGTCAATTGAACTTTATCAACTCCAAAATATTAACCGTTATATCTTAGAACAAATTGAAGAAGGCTATTTAGTTT
TAGATGAGAATTACGACATCGTTGTCAGTAATCCTGCGGCCTGTTCACTCTTGGGTATTCCCCCTCAATTTGCCAATGAA
AAATATCCTTTAGCAAAGTGGCATGCCGATTTATTTGAAATTTTAAAGTTTGGCGACTTAAAAGAAGGTGACCGATTCAT
TTTTGAGTCTCGGCTATCGGCGTACTCCATCAACATTAAAGTGCAACATCTTTTGGTCCCACAACAAACGCTAACCCTGC
TCATTTTACAAGATGCACAGCAGATTAATCAGCAAGCACAACAGCTTAAGCTTGCTGCGCTAGGGCAACTCTCAGCAAGT
ATTGCACATGAGATCCGCAATCCTCTCGCTGCAATCGTACAAGCAAATGAGTTACTGAAAGATAGCGATCCAGAACAACA
AAATACTTTGCGTCATATGATTGGCAAACAAACCAAACGTATTGATAGTATTGTTCAAGATACCTTAGGGCTTGCTCGTA
GCGAAAGAACACATCCTATCCAGATCGATGTAAAACACTTCATAGTTACATTGCTCGAAGAAGATTTATTTGACGTTAAA
CATTCAATTCAACTTAAAATTTCGGATAGTTCTTTAAAATTTTTATTTGATGAAAAACAATTAAGACAAGTCATGATTAA
TCTGGTGAGAAATGCTTTACGGCATAATGCCCCCGACTCACCGTACATTACGATCAACATTCATTCACAGACAAATAAAA
TTTATATTGATGTGATCGATTACGGTGAAGGTGTTTCAAAACGTGATATATCTCAATTATTTAAACCATTTTTTAGTACC
GAAATTAATGGAACTGGTTTAGGATTATATTTGTCTCATAGTTTTTGTGAGGCGAACCATGCAAAGCTCACCTATGTAGA
GCAAAAACAAGGGGCATGCTTCAGAATAGAATGCCCAATAATATATTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-518)

His Kinase A (phospho-acceptor) domain (HisKA)

(313-375)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

99.425

100

0.994