Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   SPM78_RS29530 Genome accession   NZ_CP139424
Coordinates   6290710..6291075 (+) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain 136790     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6285710..6296075
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPM78_RS29500 (SPM78_29500) pyrR 6286332..6286844 (-) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  SPM78_RS29505 (SPM78_29505) ruvX 6286956..6287390 (-) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  SPM78_RS29510 (SPM78_29510) - 6287390..6287959 (-) 570 WP_003084577.1 YqgE/AlgH family protein -
  SPM78_RS29515 (SPM78_29515) - 6288008..6288901 (-) 894 WP_003084580.1 TonB family protein -
  SPM78_RS29520 (SPM78_29520) gshB 6289048..6290001 (-) 954 WP_003100943.1 glutathione synthase -
  SPM78_RS29525 (SPM78_29525) pilG 6290256..6290663 (+) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  SPM78_RS29530 (SPM78_29530) pilH 6290710..6291075 (+) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  SPM78_RS29535 (SPM78_29535) - 6291126..6291662 (+) 537 WP_003084590.1 chemotaxis protein CheW -
  SPM78_RS29540 (SPM78_29540) pilJ 6291747..6293795 (+) 2049 WP_003084592.1 chemotaxis chemoreceptor PilJ -
  SPM78_RS29545 (SPM78_29545) pilK 6293856..6294731 (+) 876 WP_003084594.1 type 4 fimbrial methyltransferase PilK -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=830386 SPM78_RS29530 WP_003084587.1 6290710..6291075(+) (pilH) [Pseudomonas aeruginosa strain 136790]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=830386 SPM78_RS29530 WP_003084587.1 6290710..6291075(+) (pilH) [Pseudomonas aeruginosa strain 136790]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAATTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364