Detailed information NTG0830337

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: SPM78_RS19165
• Genome accession: NZ_CP139424
• Coordinates: 4053371..4054585 (-)
• Length: 404 a.a.
• NCBI ID: WP_003141142.1
• Uniprot ID: A0A0H2Z6F5
• Organism: Pseudomonas aeruginosa strain 136790
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4048371..4059585

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SPM78_RS19160 (SPM78_19160)	-	4051679..4052857 (-)	1179	WP_023096071.1	substrate-binding domain-containing protein	-
SPM78_RS19165 (SPM78_19165)	pilC	4053371..4054585 (-)	1215	WP_003141142.1	type II secretion system inner membrane protein GspF	Machinery gene
SPM78_RS19170 (SPM78_19170)	pilB	4054585..4055994 (-)	1410	WP_003120811.1	type II secretion system ATPase GspE	Machinery gene
SPM78_RS19175 (SPM78_19175)	gspD	4055991..4058402 (-)	2412	WP_023088536.1	type II secretion system secretin GspD	-
SPM78_RS19180 (SPM78_19180)	-	4058399..4058992 (-)	594	WP_023096072.1	type II secretion system protein M	-

Sequence

Protein

• Length: 404 a.a.
• Molecular weight: 43379.40 Da
• Isoelectric Point: 9.3769

>NTDB_id=830337 SPM78_RS19165 WP_003141142.1 4053371..4054585(-) (pilC) [Pseudomonas aeruginosa strain 136790]
MQTFRYEAADAQGRIETGTLEADSQRGALGQLRARGLTPLEVREQAGGGTGQGAGALFAPRLSDGDLAWATRQLASLLAA
SLPLEAALSATLDQAERKHIAQTLSAVRSDVRGGMRLADALAARPRDFPEIYRALVAAGEESGDLAQVMERLADYIEERN
ALRGKILTAFIYPAVVGVVSIGIVIFLLGYVVPQVVSAFSQARQDLPALTRAMLQASDFVRAWGWLCAGAIGGAYWGWRL
YLRDPQARLGWHRRVLRLPLLGRFVLGVNTARFASTLAILGSAGVPLLRALDAARQTLANDCLAQAVEEATAQVREGVSL
ASALRTRQVFPPILTHLIASGEKTGALPPMLDRAAQTLSRDIERRAMGMTALLEPLMIVVMGGVVLTIVMAVLMPIIEMN
QLVQ

Nucleotide

• Length: 1215 bp

>NTDB_id=830337 SPM78_RS19165 WP_003141142.1 4053371..4054585(-) (pilC) [Pseudomonas aeruginosa strain 136790]
ATGCAGACCTTCCGCTACGAAGCCGCCGACGCCCAGGGCCGGATCGAGACCGGCACCCTGGAGGCGGACAGCCAGCGTGG
CGCCCTTGGCCAACTGCGCGCCCGCGGCCTGACCCCGCTGGAGGTCCGCGAACAGGCTGGCGGCGGGACCGGGCAAGGGG
CGGGAGCGCTGTTCGCCCCGCGCCTGTCCGACGGCGACCTGGCCTGGGCCACCCGCCAGCTGGCCAGCCTGCTGGCCGCC
AGCCTGCCGCTGGAGGCGGCGCTGAGCGCCACCCTCGACCAGGCCGAGCGCAAGCACATCGCCCAGACCCTGAGCGCCGT
GCGCAGCGACGTGCGCGGCGGCATGCGCCTGGCCGACGCCCTTGCCGCACGGCCGCGGGACTTCCCGGAAATCTACCGGG
CGCTGGTGGCTGCGGGCGAGGAGTCCGGCGACCTGGCCCAGGTGATGGAGCGCCTGGCCGACTACATCGAGGAACGCAAC
GCCCTGCGCGGCAAGATCCTCACCGCGTTCATCTACCCGGCGGTGGTCGGCGTGGTCTCCATCGGCATCGTCATCTTCCT
CCTCGGCTACGTGGTGCCGCAGGTGGTCAGCGCCTTCTCCCAGGCGCGCCAGGACCTGCCGGCGCTGACCCGGGCGATGC
TCCAGGCCAGCGACTTCGTGCGCGCCTGGGGCTGGCTCTGCGCCGGCGCCATCGGTGGCGCTTACTGGGGCTGGCGCTTG
TACCTGCGCGACCCGCAGGCGCGGCTCGGCTGGCACCGGCGAGTGCTGCGCCTGCCTCTGCTCGGACGCTTCGTGCTCGG
GGTGAATACCGCGCGCTTCGCCTCCACCCTGGCGATCCTCGGCAGCGCCGGCGTACCGCTGCTGCGCGCGCTCGATGCGG
CGCGCCAGACGCTGGCCAACGACTGCCTCGCGCAGGCGGTGGAGGAGGCCACCGCGCAGGTTCGCGAAGGTGTCTCGCTG
GCCTCGGCGCTGCGCACGCGGCAAGTATTCCCGCCGATCCTCACCCACCTGATCGCCAGCGGCGAGAAGACCGGCGCGCT
GCCGCCGATGCTCGACCGCGCGGCGCAGACCCTGTCGCGCGACATCGAGCGCCGCGCCATGGGCATGACCGCGCTGCTCG
AGCCGCTGATGATCGTGGTCATGGGCGGGGTGGTGCTGACCATCGTGATGGCGGTGCTGATGCCGATCATCGAGATGAAC
CAGCTGGTCCAGTAG

Domains

Predicted by InterProScan.

• Type II secretion system (T2SS), protein F (T2SSF) (273-395)

• Type II secretion system (T2SS), protein F (T2SSF) (71-193)

3D structure

• AlphaFold DB: A0A0H2Z6F5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Thermus thermophilus HB27	36.386	100	0.364