Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   R8623_RS02735 Genome accession   NZ_AP026928
Coordinates   533645..533911 (+) Length   88 a.a.
NCBI ID   WP_001814186.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700406     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 528645..538911
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8623_RS02715 (PC0401_05290) - 528900..529409 (+) 510 WP_000619941.1 N-acetyltransferase -
  R8623_RS02720 (PC0401_05300) pheT 529486..531891 (+) 2406 WP_000961508.1 phenylalanine--tRNA ligase subunit beta -
  R8623_RS02725 (PC0401_05310) - 531959..532960 (-) 1002 WP_000597985.1 endonuclease/exonuclease/phosphatase family protein -
  R8623_RS02730 - 533116..533519 (+) 404 Protein_538 helix-turn-helix domain-containing protein -
  R8623_RS02735 (PC0401_05330) HI0659 533645..533911 (+) 267 WP_001814186.1 helix-turn-helix domain-containing protein Machinery gene
  R8623_RS02740 (PC0401_05340) metE 534172..536421 (+) 2250 WP_000108219.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  R8623_RS02745 (PC0401_05350) metF 536485..537351 (+) 867 WP_044812452.1 methylenetetrahydrofolate reductase [NAD(P)H] -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 9641.11 Da        Isoelectric Point: 4.2720

>NTDB_id=83023 R8623_RS02735 WP_001814186.1 533645..533911(+) (HI0659) [Streptococcus pneumoniae strain PZ900700406]
MEGCPSELFSKEEILESDMRVAIMSELIEARYEQGISQKKLEEVSGISQPVIARMETGESSLQLDTVLKVLTSLGKTLAV
VPLEQGKS

Nucleotide


Download         Length: 267 bp        

>NTDB_id=83023 R8623_RS02735 WP_001814186.1 533645..533911(+) (HI0659) [Streptococcus pneumoniae strain PZ900700406]
TTGGAAGGATGTCCATCTGAGCTCTTTAGCAAGGAGGAAATCCTTGAAAGTGATATGCGAGTGGCTATCATGAGCGAGTT
GATTGAGGCTAGGTATGAACAAGGAATCAGTCAGAAAAAGCTGGAAGAAGTCAGTGGAATAAGCCAGCCTGTCATAGCTA
GGATGGAGACAGGAGAGAGCAGTCTTCAGTTGGATACGGTCTTAAAAGTTCTAACCAGTCTAGGAAAGACACTAGCAGTC
GTTCCACTTGAACAGGGGAAAAGTTGA

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(29-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

55.844

87.5

0.489

Multiple sequence alignment