Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   SIY75_RS13730 Genome accession   NZ_CP139339
Coordinates   2831015..2831644 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain YZ22MPE6     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2826015..2836644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIY75_RS13715 helD 2826257..2828311 (-) 2055 WP_001295354.1 DNA helicase IV -
  SIY75_RS13720 yccF 2828434..2828880 (+) 447 WP_001261235.1 YccF domain-containing protein -
  SIY75_RS13725 yccS 2828890..2831052 (+) 2163 WP_000875061.1 YccS family putative transporter -
  SIY75_RS13730 sxy/tfoX 2831015..2831644 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  SIY75_RS13735 sulA 2831863..2832372 (+) 510 WP_001554869.1 SOS-induced cell division inhibitor SulA -
  SIY75_RS13740 ompA 2832729..2833769 (+) 1041 WP_000750416.1 porin OmpA -
  SIY75_RS13745 matP 2833845..2834297 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  SIY75_RS13750 ycbZ 2834483..2836243 (+) 1761 WP_000156518.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=830178 SIY75_RS13730 WP_000839153.1 2831015..2831644(-) (sxy/tfoX) [Escherichia coli strain YZ22MPE6]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=830178 SIY75_RS13730 WP_000839153.1 2831015..2831644(-) (sxy/tfoX) [Escherichia coli strain YZ22MPE6]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1