Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   SIY75_RS13305 Genome accession   NZ_CP139339
Coordinates   2745352..2746584 (-) Length   410 a.a.
NCBI ID   WP_304479835.1    Uniprot ID   -
Organism   Escherichia coli strain YZ22MPE6     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 2740352..2751584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIY75_RS13295 - 2743492..2744160 (-) 669 WP_196063181.1 ABC transporter ATP-binding protein -
  SIY75_RS13300 - 2744157..2744936 (-) 780 WP_137511819.1 ABC transporter permease -
  SIY75_RS13305 kpsS 2745352..2746584 (-) 1233 WP_304479835.1 capsule biosynthesis protein Regulator
  SIY75_RS13310 - 2746619..2748646 (-) 2028 WP_196063179.1 capsular polysaccharide biosynthesis protein -
  SIY75_RS13315 kdsB 2748643..2749383 (-) 741 WP_196063178.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  SIY75_RS13320 - 2749393..2751069 (-) 1677 WP_001298258.1 polysaccharide biosynthesis/export family protein -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 48830.33 Da        Isoelectric Point: 9.9361

>NTDB_id=830177 SIY75_RS13305 WP_304479835.1 2745352..2746584(-) (kpsS) [Escherichia coli strain YZ22MPE6]
MQGNALTVLLSGKKYLLLQGPMGPFFNDVAEWLESLGRNAVNVVFNGGDRFYCRHRQYLAYYQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPTPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFREYLLVKTQVNGVYYGESQLHCDTIT
LEINPILNNK

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=830177 SIY75_RS13305 WP_304479835.1 2745352..2746584(-) (kpsS) [Escherichia coli strain YZ22MPE6]
ATGCAAGGTAATGCACTAACCGTTTTATTATCCGGTAAAAAATATCTGCTATTGCAGGGGCCGATGGGACCTTTTTTCAA
TGATGTCGCCGAATGGTTAGAGTCATTAGGACGTAACGCTGTGAATGTTGTATTCAACGGTGGGGATCGTTTTTACTGCC
GCCATCGACAATACCTGGCTTACTACCAAACGCCGAAAGAGTTCCCCGGATGGTTAAGGGATCTCCACCGGCAATATGAC
TTTGATACCATCCTCTGCTTTGGTGACTGCCGCCCATTGCACAAAGAAGCAAAACGTTGGGCAAAGTCGAAAGGGATCCG
CTTTCTGGCATTTGAGGAAGGATATTTACGCCCGCAATTTATTACCGTTGAAGAAGGCGGAGTAAACGCATATTCATCGC
TACCGCGCGATCCGGATTTTTATCGTAAGTTACCAGATATGCCTACGCCGCACGTTGAGAACTTAAAACCTTCAACGATG
AAACGTATAGGTCATGCGATGTGGTATTACCTGATGGGCTGGCATTACCGCCATGAGTTCCCTCGCTACCGCCACCATAA
ATCGTTTTCCCCCTGGTATGAGGCTCGTTGCTGGGTTCGTGCATACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AGGTATTACCGAGGTTAATGAACGAGCTGGATCAACGTTATTATCTTGCCGTTTTGCAGGTATATAACGATAGCCAGATT
CGTAACCACAGCAATTATAACGATGTGCGTGACTATATTAATGAAGTCATGTACTCATTTTCACGTAAAGCACCGAAAGA
AAGTTATTTGGTGATCAAACACCATCCGATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAGCGGTTGAGTAAGG
AATATGGCTTAGGTGAGCGCGTCATTTATGTGCACGATCTCCCGATGCCGGAATTATTACGCCACGCAAAAGCGGTGGTG
ACGATTAACAGTACGGCGGGGATCTCTGCACTGATTCATAACAAACCACTCAAAGTGATGGGCAATGCCCTGTACGACAT
CAAAGGCTTGACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCTGATTTTAAACCGGATATGAAACTGTTTAAGAAGT
TTCGGGAATATTTATTGGTGAAGACGCAGGTTAATGGGGTTTATTATGGGGAATCACAGTTACACTGTGATACAATTACA
TTAGAAATCAACCCCATATTGAACAATAAATAA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

40.103

94.878

0.38