Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   SIY75_RS02070 Genome accession   NZ_CP139339
Coordinates   448897..449574 (-) Length   225 a.a.
NCBI ID   WP_000178161.1    Uniprot ID   -
Organism   Escherichia coli strain YZ22MPE6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 443897..454574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIY75_RS02055 chiA 445264..447957 (+) 2694 WP_000773156.1 bifunctional chitinase/lysozyme -
  SIY75_RS02060 bfd 448126..448320 (+) 195 WP_000289085.1 bacterioferritin-associated ferredoxin -
  SIY75_RS02065 bfr 448392..448868 (+) 477 WP_000675504.1 bacterioferritin -
  SIY75_RS02070 pilD 448897..449574 (-) 678 WP_000178161.1 prepilin peptidase GspO Machinery gene
  SIY75_RS02075 gspM 449574..450035 (-) 462 WP_001295161.1 type II secretion system protein GspM -
  SIY75_RS02080 gspL 450032..451195 (-) 1164 WP_001115238.1 type II secretion system protein GspL -
  SIY75_RS02085 gspK 451210..452193 (-) 984 WP_089530024.1 type II secretion system minor pseudopilin GspK -
  SIY75_RS02090 gspJ 452186..452773 (-) 588 WP_000610634.1 type II secretion system minor pseudopilin GspJ -
  SIY75_RS02095 gspI 452766..453143 (-) 378 WP_001041743.1 type II secretion system minor pseudopilin GspI -
  SIY75_RS02100 gspH 453140..453649 (-) 510 WP_001076044.1 type II secretion system minor pseudopilin GspH -
  SIY75_RS02105 gspG 453657..454094 (-) 438 WP_001202874.1 type II secretion system major pseudopilin GspG -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24898.78 Da        Isoelectric Point: 7.9563

>NTDB_id=830141 SIY75_RS02070 WP_000178161.1 448897..449574(-) (pilD) [Escherichia coli strain YZ22MPE6]
MTMLLPLFILVGFIAGYFVNAIAYHLSPLEDKTALTFRQVLVHFRQKKYAWHDTVPLILCVAAAIACALAPFTPIVTGAL
FLYFCFVLTLSVIDFRTQLLPDKLTLPLLWLGLVFNAQYGLIDLHDAVYGAVAGYGVLWCVYWGVWLVCHKEGLGYGDFK
LLAAAGAWCGWQTLPMILLIASLGGIGYAIVSQLLQRRTITTIAFGPWLALGSMINLGYLAWISY

Nucleotide


Download         Length: 678 bp        

>NTDB_id=830141 SIY75_RS02070 WP_000178161.1 448897..449574(-) (pilD) [Escherichia coli strain YZ22MPE6]
ATGACAATGCTACTGCCGCTCTTCATTCTGGTTGGTTTTATTGCAGGTTATTTTGTTAATGCCATCGCCTATCACCTCTC
GCCGTTGGAGGATAAAACGGCGTTAACGTTTCGCCAGGTATTGGTTCATTTCAGGCAAAAAAAATATGCCTGGCATGATA
CAGTGCCCCTGATACTTTGTGTTGCTGCTGCTATCGCCTGCGCCCTGGCACCTTTCACGCCCATCGTGACTGGCGCACTC
TTTCTCTATTTCTGTTTCGTACTCACGCTCAGTGTTATTGATTTTCGCACTCAGCTCCTGCCCGACAAACTCACCTTACC
GCTGCTCTGGCTTGGCTTGGTATTTAATGCGCAGTATGGATTAATTGATTTACATGATGCGGTTTACGGCGCGGTAGCGG
GCTATGGGGTGCTGTGGTGTGTTTACTGGGGCGTCTGGTTAGTTTGTCACAAAGAGGGATTGGGCTACGGTGATTTCAAG
CTACTGGCCGCTGCAGGCGCATGGTGTGGCTGGCAAACGTTGCCAATGATACTGCTGATTGCCTCGCTGGGTGGCATTGG
TTACGCCATCGTTTCACAACTTCTGCAACGCCGGACTATAACCACTATCGCATTCGGCCCGTGGCTTGCGCTCGGCAGCA
TGATAAACCTGGGGTATCTGGCCTGGATCTCTTATTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(82-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Neisseria gonorrhoeae MS11

32.946

100

0.378