Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   SLQ83_RS09335 Genome accession   NZ_CP139208
Coordinates   1936636..1938897 (-) Length   753 a.a.
NCBI ID   WP_000166999.1    Uniprot ID   A0ABX6CG46
Organism   Acinetobacter baumannii strain HNNY86G     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1931636..1943897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SLQ83_RS09325 (SLQ83_09325) adeA 1932191..1933381 (+) 1191 WP_001169091.1 multidrug efflux RND transporter periplasmic adaptor subunit AdeA -
  SLQ83_RS09330 (SLQ83_09330) adeB 1933378..1936488 (+) 3111 WP_000987607.1 multidrug efflux RND transporter permease subunit AdeB -
  SLQ83_RS09335 (SLQ83_09335) uvrA 1936636..1938897 (-) 2262 WP_000166999.1 excinuclease ABC subunit UvrA Machinery gene
  SLQ83_RS09340 (SLQ83_09340) - 1939419..1939973 (+) 555 WP_042051576.1 hypothetical protein -
  SLQ83_RS09345 (SLQ83_09345) - 1940042..1940374 (-) 333 WP_042051577.1 helix-turn-helix domain-containing protein -
  SLQ83_RS09350 (SLQ83_09350) - 1940494..1940742 (+) 249 WP_042051578.1 hypothetical protein -
  SLQ83_RS09355 (SLQ83_09355) - 1940747..1941184 (+) 438 WP_042051579.1 hypothetical protein -
  SLQ83_RS09360 (SLQ83_09360) - 1941421..1941975 (+) 555 WP_042051576.1 hypothetical protein -
  SLQ83_RS09365 (SLQ83_09365) - 1942044..1942376 (-) 333 WP_042051577.1 helix-turn-helix domain-containing protein -
  SLQ83_RS09370 (SLQ83_09370) - 1942496..1942744 (+) 249 WP_042051578.1 hypothetical protein -
  SLQ83_RS09375 (SLQ83_09375) - 1942749..1943186 (+) 438 WP_042051579.1 hypothetical protein -

Sequence

Protein


Download         Length: 753 a.a.        Molecular weight: 84627.98 Da        Isoelectric Point: 7.7931

>NTDB_id=830011 SLQ83_RS09335 WP_000166999.1 1936636..1938897(-) (uvrA) [Acinetobacter baumannii strain HNNY86G]
MTKRTINIYGARQNNLKNISLKIPKHKIVVFTGVSGSGKSSLVFETIGAEAQRQINETQDSFVRNRLQHFGVTDVDKIEN
LNVPVIINQKPLTGNIRSTVATITDIYANLRLLFSRMGEPFVGYSNVFSFNHPNGMCPQCEGIGIEQTIDIYKILDLDKS
LNEEGAIDFPTYQPTAWRWTRYADSGYFDLDKKLKDYSEKEWDLFLYAPQHKPLNPTSKWRKTALYEGLIPRFERNFLKG
EAQERNRYRNKLERIITIKECSLCKGQRLNQKSLSCKINGKNIAECTALSVSSLLEFLESIKSEKFETVLHEIKNKLNNL
NLVGLSYLNLNRVSNTLSGGESQRIKMVKHLGNSLVDLLYIFDEPSIGLHPKDLDNIIKIIQKIRDKGNSVLLVEHDPDL
IRTADHVVDMGPLSGINGGEIIYQGTFEELKNSSGLTGAFFRRPNTYKKEPRMGNEWISIKNAHLFNLKNIDVDIPKNCL
TVITGVAGSGKSTLISKVLPQQYPETKVVDQSAITASIRSNLLTYLDLLDPIRQLFAKTNKVSAKLFSFNSEGACPQCKG
SGIERVELAFLDDIEMTCDVCHGSGYAPEVLKYLYKDKNIAEILKMTVAEASNFFEDRILQQQFNSLMSLGLDYIAIGQR
LNTFSGGERQRLKLTKQINETDNIFVLDEPSTGLHPSDTEKLISLLNNLVEKGNTIIVIEHNLDIISQADWIVDIGPLAG
DKGGELVFSGTVSGLLSAEKSLTGYYLKKYLEL

Nucleotide


Download         Length: 2262 bp        

>NTDB_id=830011 SLQ83_RS09335 WP_000166999.1 1936636..1938897(-) (uvrA) [Acinetobacter baumannii strain HNNY86G]
ATGACTAAAAGAACAATAAATATTTATGGTGCCAGACAAAATAACCTTAAAAATATTTCATTGAAGATTCCTAAACATAA
AATCGTTGTCTTTACTGGAGTCTCTGGTTCAGGTAAATCTTCTTTAGTTTTCGAGACTATTGGCGCAGAAGCTCAAAGAC
AAATTAATGAAACTCAAGATAGTTTTGTACGTAATCGCTTGCAACATTTTGGTGTTACTGACGTTGATAAAATTGAAAAT
TTAAATGTACCTGTGATTATTAATCAAAAACCTTTAACGGGCAATATTCGCTCAACTGTTGCAACAATTACAGATATTTA
TGCCAATCTTCGCTTGTTATTTTCACGTATGGGTGAGCCGTTTGTTGGATACTCCAATGTCTTTTCTTTTAATCACCCAA
ATGGCATGTGTCCACAATGCGAAGGTATTGGAATCGAGCAAACAATTGATATTTACAAAATATTAGATTTAGATAAATCC
TTAAATGAAGAAGGTGCTATAGACTTCCCTACTTATCAACCTACAGCATGGCGTTGGACGCGATATGCAGATTCAGGTTA
CTTTGATTTAGATAAAAAATTAAAAGATTATAGTGAAAAAGAATGGGACTTATTTTTGTATGCTCCTCAGCACAAGCCTT
TAAACCCGACAAGTAAATGGAGAAAAACCGCACTTTATGAAGGACTAATTCCCAGATTTGAGCGTAACTTTTTAAAAGGT
GAAGCACAGGAAAGAAATCGTTATAGAAATAAACTTGAGCGAATTATTACAATCAAAGAATGCTCCTTATGTAAGGGACA
ACGGCTAAATCAAAAATCCTTATCTTGTAAAATTAATGGTAAAAATATTGCGGAATGTACGGCCCTATCCGTATCAAGTC
TTTTAGAGTTTCTCGAATCGATAAAAAGTGAAAAATTTGAAACCGTTTTGCACGAAATAAAAAATAAACTCAATAACTTA
AATCTCGTTGGACTCAGCTATTTAAACCTTAACCGCGTCAGCAATACATTGTCGGGAGGAGAATCACAACGAATTAAAAT
GGTTAAACATTTGGGTAATAGTCTGGTTGACCTACTCTATATTTTTGATGAACCAAGTATTGGCCTGCACCCCAAAGATT
TAGATAATATTATTAAAATTATTCAAAAAATTAGAGATAAGGGAAATAGTGTTTTATTGGTTGAACATGATCCTGATCTT
ATTAGAACAGCTGATCATGTCGTTGATATGGGGCCTCTTTCTGGTATTAACGGCGGTGAAATTATTTACCAAGGAACTTT
TGAAGAGTTAAAAAATTCATCAGGTTTAACAGGAGCGTTTTTTAGAAGGCCAAATACCTATAAGAAAGAACCACGTATGG
GCAATGAATGGATTTCAATTAAAAATGCTCATTTATTCAATTTAAAAAATATTGATGTCGACATTCCTAAGAACTGTCTA
ACCGTTATTACAGGAGTCGCTGGTTCAGGAAAAAGCACATTAATAAGTAAAGTATTACCACAACAATATCCTGAAACAAA
AGTTGTTGATCAATCTGCAATTACTGCAAGTATTCGCTCAAATTTATTGACCTATCTTGACCTTCTTGATCCGATTCGTC
AGCTATTTGCAAAAACAAATAAAGTAAGTGCCAAGCTCTTTAGTTTTAATAGTGAAGGTGCTTGCCCTCAATGTAAGGGA
TCTGGTATCGAAAGGGTTGAACTTGCATTTTTAGATGATATTGAAATGACATGTGATGTTTGTCATGGTTCTGGATATGC
ACCTGAAGTTTTAAAATATCTTTATAAAGATAAAAATATTGCTGAAATTTTAAAAATGACGGTTGCAGAAGCAAGCAACT
TTTTTGAAGATCGAATTTTACAGCAACAATTTAATTCTTTGATGAGTTTGGGGCTAGACTACATTGCAATCGGCCAACGC
TTAAATACATTTTCGGGTGGTGAGCGTCAAAGGTTAAAACTCACAAAACAAATTAATGAAACAGATAATATTTTTGTATT
GGATGAACCGAGTACAGGTCTACACCCTTCTGATACTGAAAAACTAATTAGTTTATTAAATAACTTAGTTGAGAAAGGCA
ACACAATCATTGTGATTGAACACAACTTAGACATCATAAGTCAAGCCGACTGGATTGTTGATATTGGTCCTTTGGCGGGT
GACAAAGGTGGTGAATTGGTATTCTCAGGAACTGTTAGCGGTTTGCTTTCAGCAGAAAAATCTTTAACAGGTTATTATTT
GAAAAAATATTTAGAGCTGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(468-671)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

34.917

100

0.361
  uvrA Streptococcus pneumoniae TIGR4

34.917

100

0.361
  uvrA Streptococcus pneumoniae D39

34.917

100

0.361