Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   QLH56_RS07340 Genome accession   NZ_CP125107
Coordinates   1525488..1526213 (+) Length   241 a.a.
NCBI ID   WP_003101905.1    Uniprot ID   A0A3L8GF06
Organism   Streptococcus iniae strain DFSM220524     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1520488..1531213
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLH56_RS07315 (QLH56_07315) tsaE 1522172..1522621 (+) 450 WP_031239039.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  QLH56_RS07320 (QLH56_07320) - 1522608..1523138 (+) 531 WP_003101915.1 GNAT family protein -
  QLH56_RS07325 (QLH56_07325) - 1523140..1524435 (+) 1296 WP_003101912.1 LCP family protein -
  QLH56_RS07330 (QLH56_07330) - 1524572..1524874 (-) 303 WP_003101910.1 hypothetical protein -
  QLH56_RS07335 (QLH56_07335) - 1524871..1525290 (-) 420 WP_003101908.1 HIT family protein -
  QLH56_RS07340 (QLH56_07340) pptA 1525488..1526213 (+) 726 WP_003101905.1 ABC transporter ATP-binding protein Regulator
  QLH56_RS07345 (QLH56_07345) - 1526216..1527247 (+) 1032 WP_016356131.1 ABC transporter permease -
  QLH56_RS07350 (QLH56_07350) - 1527308..1528099 (+) 792 WP_003101899.1 phosphotransferase family protein -
  QLH56_RS07355 (QLH56_07355) trmB 1528099..1528737 (+) 639 WP_003101896.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  QLH56_RS07365 (QLH56_07365) - 1528908..1529681 (-) 774 WP_003101893.1 sulfatase-like hydrolase/transferase -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 26959.33 Da        Isoelectric Point: 4.6255

>NTDB_id=829973 QLH56_RS07340 WP_003101905.1 1525488..1526213(+) (pptA) [Streptococcus iniae strain DFSM220524]
MLKIEHLTGGYLNIPVLKDVSFSVEDGQLVGLIGLNGAGKSTTINEIIGLLKPYQGKISIDGLTLDENMAEYRKKIGFIP
ETPSLYEELTLSEHLETIAMAYDIDVKLAMERAKPLLESYRLTDKLDWYPVNFSKGMKQKVMIICAFIIDPSLFILDEPF
LGLDPLAISDLISYLESEKVKGKSILMSTHVLDSAEKMCDRFVILHQGQVRAQGTLEELRQEFAQTGASLNDIYLALTRE
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=829973 QLH56_RS07340 WP_003101905.1 1525488..1526213(+) (pptA) [Streptococcus iniae strain DFSM220524]
ATGTTAAAAATTGAACATTTAACAGGAGGTTACCTTAATATTCCTGTTCTTAAAGACGTCAGCTTTTCTGTGGAAGACGG
TCAGCTGGTTGGTTTGATTGGTTTGAATGGTGCAGGTAAATCCACAACCATTAATGAAATCATCGGACTTTTGAAACCCT
ACCAAGGGAAAATCAGCATTGACGGCCTAACCTTAGATGAAAACATGGCAGAATACCGCAAAAAAATTGGTTTTATTCCG
GAAACACCAAGTCTTTATGAAGAACTGACTTTAAGTGAGCACCTTGAAACCATTGCCATGGCCTATGATATTGATGTGAA
ACTAGCCATGGAACGTGCTAAACCACTGCTTGAAAGCTATCGATTAACGGATAAATTAGACTGGTATCCGGTAAATTTTT
CTAAAGGAATGAAGCAAAAAGTCATGATTATTTGTGCTTTTATCATAGACCCAAGCCTCTTTATTTTAGACGAGCCATTT
TTAGGACTTGACCCATTAGCGATCTCAGACTTGATTAGCTACCTTGAAAGTGAAAAAGTTAAAGGCAAATCTATTTTGAT
GAGTACCCATGTCTTAGATTCCGCTGAAAAAATGTGTGATCGTTTTGTCATTTTACATCAGGGACAAGTTAGAGCACAGG
GAACTTTAGAAGAACTCAGACAAGAATTTGCTCAAACTGGAGCAAGCCTTAATGACATCTACCTTGCCTTAACAAGAGAG
GTCTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3L8GF06

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

75.314

99.17

0.747
  pptA Streptococcus thermophilus LMD-9

74.059

99.17

0.734