Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   QLH56_RS05655 Genome accession   NZ_CP125107
Coordinates   1142122..1142835 (-) Length   237 a.a.
NCBI ID   WP_003100405.1    Uniprot ID   A0A3L8GBZ9
Organism   Streptococcus iniae strain DFSM220524     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1137122..1147835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLH56_RS05630 (QLH56_05630) - 1138980..1139126 (+) 147 WP_003100410.1 hypothetical protein -
  QLH56_RS05635 (QLH56_05635) - 1139155..1140087 (+) 933 WP_003100409.1 Gfo/Idh/MocA family oxidoreductase -
  QLH56_RS05640 (QLH56_05640) - 1140098..1140598 (+) 501 WP_003100408.1 GNAT family N-acetyltransferase -
  QLH56_RS05645 (QLH56_05645) nrdG 1140608..1141228 (+) 621 WP_003100407.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  QLH56_RS05650 (QLH56_05650) yaaA 1141332..1142063 (-) 732 WP_031239270.1 peroxide stress protein YaaA -
  QLH56_RS05655 (QLH56_05655) treR 1142122..1142835 (-) 714 WP_003100405.1 trehalose operon repressor Regulator
  QLH56_RS05660 (QLH56_05660) treP 1143040..1144992 (+) 1953 WP_016356256.1 PTS system trehalose-specific EIIBC component -
  QLH56_RS05665 (QLH56_05665) treC 1145057..1146682 (+) 1626 WP_003100403.1 alpha,alpha-phosphotrehalase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27483.80 Da        Isoelectric Point: 9.5104

>NTDB_id=829964 QLH56_RS05655 WP_003100405.1 1142122..1142835(-) (treR) [Streptococcus iniae strain DFSM220524]
MKKYESIFKDLETKISKEVYAIDDFLPTEIELSKDYNVSRDTIRKALNLLAKAGLVKKQQGRGTQVIKHHHILFPISELT
SYQELVSYFDMDSKTNVIAIDKLIVDPKMEKLTGFPTHSLVWRVTRQRVVDGVASVLDIDYLDKDIVPNMTREIAQISLY
AFLEKDLKLSIDFALKEVTIDQVNDRDKILLDLGSDKHVVSVKSKVYLSNNKQFQFTESRHKLEKFKFVDFARRNPK

Nucleotide


Download         Length: 714 bp        

>NTDB_id=829964 QLH56_RS05655 WP_003100405.1 1142122..1142835(-) (treR) [Streptococcus iniae strain DFSM220524]
ATGAAGAAATACGAAAGCATTTTTAAAGACCTCGAAACAAAAATTTCAAAAGAAGTTTATGCCATAGATGACTTTTTACC
AACTGAAATCGAATTAAGTAAAGACTATAATGTTAGTAGGGATACTATTCGAAAAGCACTCAATCTTTTAGCAAAAGCTG
GTTTGGTCAAAAAACAACAAGGTCGAGGAACACAGGTGATTAAACACCACCATATTTTATTTCCTATATCTGAATTAACA
AGTTACCAAGAACTTGTTTCCTATTTTGATATGGATTCTAAAACCAACGTGATTGCTATTGACAAACTCATTGTTGATCC
TAAAATGGAAAAGTTGACTGGCTTTCCAACACATTCACTGGTTTGGCGCGTTACCAGACAAAGAGTGGTAGACGGGGTTG
CCTCTGTATTGGATATCGACTATTTGGACAAGGATATTGTGCCAAATATGACAAGGGAAATCGCCCAAATATCACTTTAT
GCCTTCTTGGAAAAAGACTTAAAACTGTCTATTGATTTTGCTCTAAAGGAAGTCACTATCGATCAAGTCAATGACCGAGA
TAAAATTCTATTAGATCTTGGTTCAGACAAACATGTGGTTTCTGTCAAATCTAAAGTATACCTCTCAAATAACAAGCAAT
TTCAATTTACTGAAAGCCGACATAAATTAGAGAAATTCAAATTTGTTGATTTTGCAAGACGCAATCCCAAATAA

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(92-227)

Bacterial regulatory proteins, gntR family (GntR)

(3-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3L8GBZ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

67.66

99.156

0.671