Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   QMA14_RS06385 Genome accession   NZ_CP125087
Coordinates   1291300..1293702 (+) Length   800 a.a.
NCBI ID   WP_049375456.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain EL1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1286300..1298702
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMA14_RS06365 (QMA14_06365) dcuC 1287092..1288450 (+) 1359 WP_284173573.1 anaerobic C4-dicarboxylate transporter DcuC -
  QMA14_RS06370 (QMA14_06370) folK 1288505..1289008 (-) 504 WP_284173574.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  QMA14_RS06375 (QMA14_06375) pcnB 1289008..1290324 (-) 1317 WP_369694615.1 polynucleotide adenylyltransferase PcnB -
  QMA14_RS06380 (QMA14_06380) dksA 1290602..1291039 (-) 438 WP_005696429.1 RNA polymerase-binding protein DksA -
  QMA14_RS06385 (QMA14_06385) rec2 1291300..1293702 (+) 2403 WP_049375456.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QMA14_RS06390 (QMA14_06390) msbA 1293753..1295501 (+) 1749 WP_005697209.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  QMA14_RS06395 (QMA14_06395) lpxK 1295555..1296535 (+) 981 WP_284173575.1 tetraacyldisaccharide 4'-kinase -
  QMA14_RS06400 (QMA14_06400) - 1296552..1296731 (+) 180 WP_284173576.1 Trm112 family protein -
  QMA14_RS06405 (QMA14_06405) kdsB 1296741..1297499 (+) 759 WP_284173577.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 800 a.a.        Molecular weight: 89848.22 Da        Isoelectric Point: 9.3773

>NTDB_id=829900 QMA14_RS06385 WP_049375456.1 1291300..1293702(+) (rec2) [Haemophilus parainfluenzae strain EL1]
MKITLFQLCMMFIVSALSLLVVPDFLLFTWQRAGLGILLLVMTTLCSHWFNYFKARNFCMSGILFLLTLAYAHSPALSLL
GQAEKISSLPNKITLDLYISEILHQQDYQTLVARTSLFDGKEQQIFINWKAPEKPQVGEIWRADVKLRPISARLNHGGFD
RQQWYFSKRIIAVGNVKSAVKMSEDFSYRTHFLQTSLNQTEGLSLQGLLIALAFGERAWLDNKTWLIYQQTNTAHLIAIS
GLHIGLAMGIGFFFARFLQLALPTRFISPWFPLCFGVLIALGYAYLAGFSLPTFRAMMALLFIAILQFSRRYYTPSKMLC
LVVAFLLFCDPLMPLSVSFWLSVGAVTCLIVWYRYVPLSIIEWQHQKLSRKVRWILGLFHLQLGLLILFTPIQLFFFNGF
ALNGFLANLIAVPLYSFLLVPLILFAVLTNGAFSSWHLSNTIAQGITQFLSVFQGAYVPISINLSLILTALLSLVFGGML
GGLYFLSQAQTKNIPLKSSRFFTLNSTKILSSEAYKQALLGVILISSFCIGTLGYRYITKPKWQLDTLDVGQGLATLIVK
EGKGVLYDTGPAWQSGIGGSSMAELEILPYLQREGIELETLILSHDDNDHSGGAKTILTAYSEIELITPSRKSYGEMHRT
FCLQGKQWQWRGLDFKILSPMQITDRAENPQSCVILLTDGQYQILLTGDADVATERSFAENLGKINVLQVGHHGSKTSTG
EFLLGQTKPDIALISSGRWNAWNFPHPTVIERLNRYQSAVENTAISGHIRLNFTEKGIEIEKARGDFSPWFARVIGLSPK

Nucleotide


Download         Length: 2403 bp        

>NTDB_id=829900 QMA14_RS06385 WP_049375456.1 1291300..1293702(+) (rec2) [Haemophilus parainfluenzae strain EL1]
ATGAAAATCACGCTATTTCAACTGTGCATGATGTTTATTGTTTCTGCCTTATCCTTGCTTGTAGTACCTGATTTTTTACT
GTTTACCTGGCAACGAGCAGGGCTGGGCATTTTATTGCTGGTTATGACCACACTTTGTTCCCATTGGTTCAATTATTTTA
AAGCTAGAAATTTTTGCATGAGCGGTATCTTGTTTTTGCTTACTTTGGCTTATGCGCATTCACCTGCTTTATCGTTATTG
GGACAAGCAGAGAAAATTTCAAGTTTACCAAATAAAATCACCTTAGATCTTTATATCTCAGAAATTCTTCATCAACAAGA
TTATCAAACGTTGGTTGCAAGAACGTCATTATTTGATGGGAAAGAACAACAGATTTTTATTAATTGGAAAGCGCCGGAAA
AGCCACAAGTAGGTGAAATTTGGCGGGCTGATGTAAAACTTCGACCTATTTCTGCAAGACTTAATCATGGGGGATTTGAT
CGACAGCAATGGTATTTTTCCAAAAGGATTATTGCCGTTGGAAATGTGAAAAGTGCGGTCAAAATGAGCGAAGATTTTTC
TTACCGCACACATTTTCTACAGACTAGCCTCAATCAGACAGAGGGGCTTTCTTTGCAAGGCTTGCTTATTGCATTGGCAT
TTGGTGAGCGGGCTTGGTTAGATAATAAAACATGGCTGATTTACCAACAAACGAATACGGCACATTTGATTGCCATTTCA
GGGCTCCATATTGGTTTAGCAATGGGAATAGGCTTTTTCTTTGCTCGATTCTTGCAACTCGCACTGCCTACACGCTTTAT
TTCACCCTGGTTTCCACTTTGCTTTGGTGTGTTGATTGCTTTAGGTTATGCCTATTTAGCCGGATTTAGTTTACCGACCT
TCCGTGCAATGATGGCATTGCTTTTTATTGCAATCCTTCAATTTTCGCGACGATATTACACGCCTTCGAAAATGCTTTGT
TTGGTCGTGGCATTTCTGCTTTTTTGTGATCCACTTATGCCACTTTCGGTTAGCTTTTGGCTTTCAGTTGGTGCTGTTAC
CTGCCTGATTGTATGGTACCGATATGTTCCCTTATCAATAATCGAGTGGCAACATCAAAAATTATCCCGCAAAGTGCGGT
GGATTTTGGGCTTGTTTCATTTGCAACTTGGGCTGCTGATTTTATTCACGCCTATTCAACTTTTCTTTTTTAATGGCTTT
GCGTTAAATGGATTCTTGGCGAATTTAATCGCAGTGCCCTTGTATAGTTTCTTACTGGTACCCTTGATTCTCTTTGCAGT
GTTAACGAATGGCGCATTTTCTTCTTGGCATCTTTCAAATACGATTGCTCAAGGTATTACGCAATTTCTCAGTGTTTTCC
AAGGCGCGTATGTTCCGATTTCGATTAATTTATCCCTCATTCTGACCGCACTTTTAAGCCTTGTTTTTGGCGGAATGTTA
GGTGGATTGTATTTTTTGTCTCAAGCTCAAACAAAAAATATACCGTTAAAATCAAGTCGATTTTTCACATTAAACAGCAC
AAAAATCTTATCGTCAGAAGCTTATAAACAAGCTCTTTTAGGTGTTATTCTTATTTCTAGTTTTTGTATTGGTACTCTTG
GGTATCGATATATCACGAAACCCAAATGGCAGTTAGATACGTTAGATGTGGGACAAGGTTTAGCAACCTTAATTGTAAAA
GAAGGGAAAGGCGTGTTGTATGATACGGGGCCCGCTTGGCAGAGTGGAATAGGTGGCTCTTCTATGGCGGAATTAGAAAT
ATTGCCTTATCTTCAACGGGAAGGGATTGAACTTGAAACCTTGATTTTAAGCCATGATGATAATGACCATTCAGGCGGTG
CTAAAACGATTTTAACCGCATACTCAGAGATTGAGCTGATTACACCTTCTCGCAAAAGCTATGGCGAAATGCACCGCACT
TTTTGTCTTCAGGGGAAACAATGGCAGTGGCGAGGACTTGATTTTAAAATTCTTTCACCAATGCAAATTACAGACAGGGC
GGAAAATCCGCAATCTTGCGTAATTTTACTAACGGATGGGCAGTATCAGATCCTTTTAACTGGTGATGCTGATGTGGCGA
CAGAAAGATCTTTTGCTGAAAACCTCGGCAAGATTAACGTGTTACAGGTGGGGCATCATGGTAGTAAAACTTCAACAGGC
GAGTTTTTACTGGGACAGACAAAACCGGATATAGCCTTAATTTCAAGTGGACGATGGAATGCGTGGAATTTTCCTCATCC
AACCGTGATTGAACGGTTAAATCGTTATCAAAGTGCGGTCGAAAATACCGCTATTTCAGGTCATATAAGGTTAAATTTTA
CTGAAAAGGGCATTGAAATTGAAAAAGCGAGAGGAGATTTTTCACCTTGGTTTGCCCGTGTAATTGGATTATCCCCGAAA
TAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(212-477)

Domain of unknown function (DUF4131) (DUF4131)

(35-179)

Metallo-beta-lactamase superfamily (Lactamase_B)

(549-735)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

60.075

100

0.604