Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   QMA14_RS05010 Genome accession   NZ_CP125087
Coordinates   1009484..1010437 (+) Length   317 a.a.
NCBI ID   WP_005697091.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain EL1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1004484..1015437
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMA14_RS04990 (QMA14_04990) accA 1005073..1006020 (-) 948 WP_284174466.1 acetyl-CoA carboxylase carboxyl transferase subunit alpha -
  QMA14_RS04995 (QMA14_04995) znuB 1006108..1006893 (-) 786 WP_005697101.1 zinc ABC transporter permease subunit ZnuB -
  QMA14_RS05000 (QMA14_05000) znuC 1006903..1007697 (-) 795 WP_005697160.1 zinc ABC transporter ATP-binding protein ZnuC -
  QMA14_RS05005 (QMA14_05005) mepM 1007876..1009351 (+) 1476 WP_005697089.1 murein DD-endopeptidase MepM -
  QMA14_RS05010 (QMA14_05010) ceuB 1009484..1010437 (+) 954 WP_005697091.1 ABC transporter permease Machinery gene
  QMA14_RS05015 (QMA14_05015) - 1010430..1011389 (+) 960 WP_005697155.1 iron chelate uptake ABC transporter family permease subunit -
  QMA14_RS05020 (QMA14_05020) - 1011380..1012141 (+) 762 WP_005697095.1 ABC transporter ATP-binding protein -
  QMA14_RS05025 (QMA14_05025) - 1012156..1013064 (+) 909 WP_005697118.1 siderophore ABC transporter substrate-binding protein -
  QMA14_RS05030 (QMA14_05030) - 1013185..1014135 (+) 951 WP_005697092.1 sigma 54-interacting transcriptional regulator -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35028.23 Da        Isoelectric Point: 10.2040

>NTDB_id=829898 QMA14_RS05010 WP_005697091.1 1009484..1010437(+) (ceuB) [Haemophilus parainfluenzae strain EL1]
MIKRRYLIFLLIVLSFVSLFLGVSTVNLQGLLNFEGNQWQIFFISRVPRLISILIAGASLSICGLVMQQLSRNRFVSPTT
AGTMDSARLGILMAMLFFPTASMLLKTTIAVIVSFLGTLLFMTILSRLKFKDTIFVPLVGIMFGNIISSITAFIAYKEDL
LQNLSGWLQGDFSLVMSGRYELLYFSIPTLIVAYLFAHRFSIVGMGKDFAVNLGLNYNQVLYLGLLIVAVVSSIIIVSVG
VIPFLGLIIPNIVTLYLGDNLKKVLSHTALLGAVFVLFCDILGRSVIYPYEISINAVVGVFGSGIFLFLLLKRYRNG

Nucleotide


Download         Length: 954 bp        

>NTDB_id=829898 QMA14_RS05010 WP_005697091.1 1009484..1010437(+) (ceuB) [Haemophilus parainfluenzae strain EL1]
ATGATTAAGCGACGTTATCTGATTTTTCTTTTGATCGTGCTTTCCTTTGTTTCACTTTTTCTCGGGGTAAGTACTGTTAA
TCTGCAAGGGTTACTGAATTTTGAAGGTAATCAATGGCAGATATTTTTTATCAGTCGAGTGCCTCGTTTAATCAGTATCT
TGATTGCGGGTGCATCCTTAAGTATTTGTGGCTTAGTGATGCAGCAACTCAGCCGAAACCGATTTGTTTCGCCTACCACC
GCGGGCACCATGGACAGTGCAAGATTAGGCATTTTAATGGCGATGCTGTTTTTCCCAACGGCTTCAATGTTGTTAAAAAC
CACCATTGCGGTCATCGTATCTTTCCTTGGCACATTGTTATTTATGACGATTCTGTCCCGTTTGAAATTCAAGGACACGA
TTTTTGTGCCTTTAGTGGGGATTATGTTTGGTAATATCATCAGTTCAATTACTGCTTTTATCGCTTACAAAGAAGATTTA
TTGCAAAACTTATCTGGGTGGCTACAAGGGGATTTTTCTCTTGTAATGTCTGGTCGTTATGAATTGTTGTATTTTAGTAT
TCCTACACTCATCGTGGCTTATTTATTTGCGCATCGTTTTTCTATTGTTGGGATGGGAAAAGATTTTGCGGTTAATCTAG
GTCTAAATTATAACCAAGTCCTTTATCTCGGTTTGCTCATTGTGGCGGTGGTGTCTTCGATTATTATCGTGTCTGTTGGC
GTGATCCCTTTCTTGGGGTTAATTATTCCGAATATCGTCACGCTTTATTTAGGGGATAACTTGAAGAAAGTGCTATCTCA
TACCGCCTTGTTAGGCGCTGTATTTGTTTTATTCTGCGATATTTTAGGTCGAAGTGTGATTTATCCTTATGAGATTTCCA
TTAATGCCGTGGTTGGTGTATTTGGCAGTGGTATCTTCTTATTTTTATTATTAAAACGGTATAGAAATGGCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

55.663

97.476

0.543