Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   SIS06_RS19715 Genome accession   NZ_CP139188
Coordinates   3749617..3750750 (-) Length   377 a.a.
NCBI ID   WP_014478242.1    Uniprot ID   -
Organism   Bacillus subtilis strain H17-16     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3744617..3755750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIS06_RS19675 (SIS06_19675) ywnA 3744748..3745149 (-) 402 WP_003227734.1 Rrf2 family transcriptional regulator -
  SIS06_RS19680 (SIS06_19680) ureC 3745284..3746993 (-) 1710 WP_003243090.1 urease subunit alpha -
  SIS06_RS19685 (SIS06_19685) ureB 3746990..3747364 (-) 375 WP_003227726.1 urease subunit beta -
  SIS06_RS19690 (SIS06_19690) ureA 3747361..3747678 (-) 318 WP_003227724.1 urease subunit gamma -
  SIS06_RS19695 (SIS06_19695) - 3747873..3748034 (-) 162 WP_283933853.1 hypothetical protein -
  SIS06_RS22165 - 3748243..3748425 (-) 183 WP_032727042.1 transporter substrate-binding protein -
  SIS06_RS19705 (SIS06_19705) csbD 3748723..3748911 (-) 189 WP_128422439.1 stress response protein CsbD -
  SIS06_RS19710 (SIS06_19710) - 3748984..3749463 (-) 480 WP_003244390.1 hypothetical protein -
  SIS06_RS19715 (SIS06_19715) rapC 3749617..3750750 (-) 1134 WP_014478242.1 response regulator aspartate phosphatase RapB Regulator
  SIS06_RS19720 (SIS06_19720) moaA 3750943..3751968 (-) 1026 WP_160221874.1 GTP 3',8-cyclase MoaA -
  SIS06_RS19725 (SIS06_19725) fdhD 3751984..3752772 (-) 789 WP_015714864.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  SIS06_RS19730 (SIS06_19730) - 3753005..3753166 (-) 162 WP_003227706.1 hypothetical protein -
  SIS06_RS19735 (SIS06_19735) ywmD 3753261..3753935 (-) 675 WP_003243553.1 vWA domain-containing protein -
  SIS06_RS19740 (SIS06_19740) - 3753988..3754128 (-) 141 WP_014478246.1 hypothetical protein -
  SIS06_RS19745 (SIS06_19745) ywmC 3754259..3754942 (-) 684 WP_003227700.1 vWA domain-containing protein -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 45055.21 Da        Isoelectric Point: 4.7975

>NTDB_id=829885 SIS06_RS19715 WP_014478242.1 3749617..3750750(-) (rapC) [Bacillus subtilis strain H17-16]
MAAYEIPSSQVGVKINKWYKHILAFQVADAVKLKEEIDLDIEQMEEDQLLLLYYQLISYRHQIMLDYVKPDLHEESQLQY
RELIKTLESNQDSISGLSEYYFHLFRGMYEFEQNNYISAISFYRKAEKMLAFVEDEIERAEFHFKVAEVFYIMKQTHFSM
NHAVQALETYKAHDFYRVRRIQCHFVISGNYIDYRNYEKALEHLDDAYRLALLEGQPRLIGSALYNIGNCYDDKGELDQA
AEYFEKALPVFEDYQLEQLPKALFSLTRVLFKKQDSQAAMRYYEKGIAIAQKRNDFFSLAKYKFLQALYVESVNLDMIQE
VFDYMEEKGLYVYIEEFALDAASYFSHREQYKEAVYFYEKAVSMREMIQRNDCLYEV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=829885 SIS06_RS19715 WP_014478242.1 3749617..3750750(-) (rapC) [Bacillus subtilis strain H17-16]
ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAAGTGGTATAAGCACATTTTAGCATTTCAAGT
GGCTGATGCCGTAAAGCTGAAGGAAGAAATTGATCTAGATATCGAACAGATGGAAGAGGATCAGCTGCTTCTCCTGTATT
ATCAGCTGATCAGCTACCGGCACCAAATTATGCTGGATTATGTAAAGCCTGACCTGCACGAGGAATCTCAGCTTCAATAT
CGTGAATTGATCAAAACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAGTATTATTTTCACTTGTTTAGAGG
AATGTACGAATTTGAACAGAACAATTACATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTGTAG
AAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTCTTTTATATTATGAAGCAGACGCACTTTTCCATG
AACCATGCCGTACAGGCGCTGGAGACGTATAAGGCTCACGATTTTTATAGAGTCAGAAGAATTCAATGCCATTTCGTCAT
ATCAGGAAACTACATAGACTACAGAAATTATGAAAAAGCGCTTGAACATTTAGATGACGCGTATCGCCTTGCTTTATTGG
AAGGACAGCCCCGTTTGATCGGATCAGCCCTTTATAATATCGGGAATTGCTATGATGACAAGGGGGAGCTGGATCAGGCC
GCCGAATACTTTGAAAAAGCGCTTCCTGTCTTCGAGGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCTGAC
TCGCGTTCTTTTCAAAAAACAAGATAGCCAAGCCGCGATGCGGTACTATGAAAAAGGGATTGCCATTGCCCAAAAACGAA
ACGACTTCTTCAGTCTGGCAAAATATAAATTTCTGCAGGCATTATATGTGGAATCTGTCAATTTGGATATGATTCAAGAA
GTATTTGATTATATGGAAGAAAAGGGCCTGTATGTATATATTGAAGAATTTGCTTTAGATGCTGCCTCCTATTTCAGTCA
TCGCGAACAATATAAAGAAGCGGTGTATTTTTATGAAAAAGCGGTCAGCATGAGAGAGATGATTCAAAGGAACGATTGTT
TATATGAAGTATGA

Domains

Predicted by InterProScan.

MalT-like TPR region (TPR_MalT)

(154-305)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.632

100

0.43
  rapF Bacillus subtilis subsp. subtilis str. 168

42.667

99.469

0.424