Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   SIS06_RS17725 Genome accession   NZ_CP139188
Coordinates   3338020..3338745 (-) Length   241 a.a.
NCBI ID   WP_071580852.1    Uniprot ID   -
Organism   Bacillus subtilis strain H17-16     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3333020..3343745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIS06_RS17715 (SIS06_17715) - 3333400..3335196 (-) 1797 WP_283933758.1 M3 family oligoendopeptidase -
  SIS06_RS17720 (SIS06_17720) - 3336827..3338023 (-) 1197 WP_320535427.1 ABC transporter permease -
  SIS06_RS17725 (SIS06_17725) pptA 3338020..3338745 (-) 726 WP_071580852.1 ABC transporter ATP-binding protein Regulator
  SIS06_RS17730 (SIS06_17730) - 3338803..3339909 (-) 1107 WP_029318433.1 methyltransferase -
  SIS06_RS17735 (SIS06_17735) - 3339939..3341180 (-) 1242 WP_283933759.1 MFS transporter -
  SIS06_RS17740 (SIS06_17740) - 3341170..3341694 (-) 525 WP_014480814.1 GNAT family N-acetyltransferase -
  SIS06_RS17745 (SIS06_17745) - 3341694..3343028 (-) 1335 WP_040081871.1 glutathionylspermidine synthase family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27605.47 Da        Isoelectric Point: 7.9046

>NTDB_id=829871 SIS06_RS17725 WP_071580852.1 3338020..3338745(-) (pptA) [Bacillus subtilis strain H17-16]
MLRVEQVTGGYKRNKMANHNISFQIDKGEIVGLVGLNGAGKSTIIKHILGILKPTEGRVTLDGVSLRDDPSYFRPRISYI
PEVPQLYQELTLWEHLEFTASAYKMKREKFELKAAELLKKFRMEKKINDYPQTFSKGMQQKVMILCAFLVEAVFFIIDEP
FVGLDPLAIDTLIDLMVEMKQRGMGILVSTHILTMAEKYCDRVVFLHEGKVRVQGTIQEIQDQMKMNDVSLEEMFIGVVK
N

Nucleotide


Download         Length: 726 bp        

>NTDB_id=829871 SIS06_RS17725 WP_071580852.1 3338020..3338745(-) (pptA) [Bacillus subtilis strain H17-16]
ATGTTGCGCGTAGAACAGGTTACAGGAGGTTATAAGCGTAATAAGATGGCAAACCACAATATTTCTTTTCAGATTGATAA
AGGGGAAATAGTTGGTTTAGTTGGGCTAAATGGTGCGGGGAAAAGCACGATCATTAAGCACATCTTAGGTATCTTAAAAC
CCACTGAAGGCCGTGTTACACTTGATGGTGTGTCATTAAGAGATGATCCCTCCTATTTTAGGCCGCGTATTTCCTATATC
CCTGAAGTTCCTCAATTATATCAAGAATTAACTCTTTGGGAACATTTGGAATTCACTGCATCAGCTTATAAAATGAAAAG
AGAAAAATTCGAATTAAAAGCGGCCGAACTGTTAAAAAAATTTAGAATGGAAAAAAAAATAAATGATTACCCGCAGACTT
TTTCGAAGGGGATGCAACAAAAGGTTATGATTCTTTGTGCCTTCTTGGTTGAAGCAGTTTTCTTTATTATTGATGAACCC
TTTGTTGGGCTAGACCCTTTAGCAATTGATACATTAATTGATTTAATGGTTGAAATGAAACAGAGGGGAATGGGAATCCT
TGTTTCTACTCATATTTTAACTATGGCTGAAAAATATTGTGACCGTGTTGTTTTCTTACATGAGGGAAAGGTTAGGGTGC
AAGGAACCATTCAGGAAATTCAAGATCAGATGAAAATGAATGATGTTTCATTAGAAGAAATGTTTATTGGGGTTGTGAAA
AATTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(19-161)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

48.548

100

0.485
  pptA Streptococcus thermophilus LMD-9

48.548

100

0.485