Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Regulator
Locus tag   SIS06_RS17065 Genome accession   NZ_CP139188
Coordinates   3208981..3209841 (-) Length   286 a.a.
NCBI ID   WP_128422373.1    Uniprot ID   Q9R9J5
Organism   Bacillus subtilis strain H17-16     
Function   modification of ComX; production of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 3203981..3214841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIS06_RS17030 (SIS06_17030) mrpE 3204211..3204687 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  SIS06_RS17035 (SIS06_17035) mrpF 3204687..3204971 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  SIS06_RS17040 (SIS06_17040) mnhG 3204955..3205329 (+) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  SIS06_RS17045 (SIS06_17045) yuxO 3205368..3205748 (-) 381 WP_017695528.1 hotdog fold thioesterase -
  SIS06_RS17050 (SIS06_17050) comA 3205767..3206411 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  SIS06_RS17055 (SIS06_17055) comP 3206492..3208792 (-) 2301 WP_088300729.1 histidine kinase Regulator
  SIS06_RS17060 (SIS06_17060) comX 3208804..3208968 (-) 165 WP_015384519.1 competence pheromone ComX -
  SIS06_RS17065 (SIS06_17065) comQ 3208981..3209841 (-) 861 WP_128422373.1 polyprenyl synthetase family protein Regulator
  SIS06_RS17070 (SIS06_17070) degQ 3210026..3210166 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  SIS06_RS17075 (SIS06_17075) - 3210388..3210513 (+) 126 WP_144500545.1 hypothetical protein -
  SIS06_RS17080 (SIS06_17080) - 3210627..3210995 (+) 369 WP_144500544.1 hypothetical protein -
  SIS06_RS17085 (SIS06_17085) pdeH 3210971..3212200 (-) 1230 WP_003243525.1 cyclic di-GMP phosphodiesterase -
  SIS06_RS17090 (SIS06_17090) pncB 3212337..3213809 (-) 1473 WP_003228788.1 nicotinate phosphoribosyltransferase -
  SIS06_RS17095 (SIS06_17095) pncA 3213825..3214376 (-) 552 WP_015714627.1 cysteine hydrolase family protein -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32618.54 Da        Isoelectric Point: 4.8309

>NTDB_id=829869 SIS06_RS17065 WP_128422373.1 3208981..3209841(-) (comQ) [Bacillus subtilis strain H17-16]
MKEIVSQKIMNQDLERYLQNFIESKDTFEFADLALHHYLAFNGQDQKAIEWLAAGIELLILSFDIYDDLEDQDNGSAVWM
KIDSSIALNAVTALYTLSIQVMCQASHEPEFSQEILNFALQSIQGQHDDIVNAPQTEEACLEMIKNKSGALTALPCVMGV
MLATGKYHPIVASYSYELGIIAQIENDYRGLYYLNNDFIQKKNTLAYLYLNKRFNAASAEILSWYENTELFLSLNSKQIK
EKLTEAGVVQYLLVMKHLSLQKLKKEIARLELQENKIKKLITGIIK

Nucleotide


Download         Length: 861 bp        

>NTDB_id=829869 SIS06_RS17065 WP_128422373.1 3208981..3209841(-) (comQ) [Bacillus subtilis strain H17-16]
ATGAAGGAGATTGTAAGCCAAAAAATAATGAATCAGGACTTGGAACGATATCTTCAGAATTTTATTGAGTCTAAGGATAC
GTTTGAGTTTGCCGATTTGGCTCTTCATCATTATTTAGCTTTTAACGGTCAGGACCAAAAAGCAATCGAATGGCTAGCTG
CCGGAATTGAATTGCTTATACTCTCATTCGATATTTATGATGACTTAGAGGATCAAGATAATGGAAGTGCTGTCTGGATG
AAGATTGACTCGTCAATCGCTTTAAATGCAGTTACAGCTCTTTACACCCTAAGTATACAAGTGATGTGTCAAGCTAGTCA
TGAACCAGAATTTTCACAAGAGATATTGAATTTTGCGTTACAATCAATTCAAGGCCAGCATGATGATATTGTGAATGCGC
CGCAAACGGAAGAAGCCTGTCTTGAAATGATCAAAAATAAATCAGGAGCGCTAACGGCATTGCCCTGTGTAATGGGAGTA
ATGTTGGCAACAGGCAAATACCATCCCATTGTAGCTTCTTATTCTTATGAACTTGGGATTATTGCACAAATCGAAAATGA
TTACCGAGGTTTATATTATCTAAATAACGATTTTATTCAGAAGAAAAACACATTGGCATACTTATACTTAAATAAACGTT
TTAATGCAGCTTCTGCAGAAATCTTGAGTTGGTATGAAAATACTGAGTTGTTCTTATCATTGAATTCCAAACAAATAAAA
GAAAAATTAACTGAGGCAGGCGTAGTGCAATATTTACTTGTAATGAAACACTTGTCATTACAAAAACTAAAGAAAGAAAT
TGCTAGATTAGAATTGCAAGAGAATAAAATAAAAAAATTAATAACAGGAATCATAAAATAA

Domains

Predicted by InterProScan.

Polyprenyl synthetase (polyprenyl_synt)

(40-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9R9J5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Bacillus subtilis subsp. subtilis str. 168

45.423

99.301

0.451