Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   SIS06_RS16100 Genome accession   NZ_CP139188
Coordinates   3031710..3032420 (-) Length   236 a.a.
NCBI ID   WP_015714539.1    Uniprot ID   -
Organism   Bacillus subtilis strain H17-16     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3026710..3037420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIS06_RS16080 (SIS06_16080) cysK 3026761..3027696 (+) 936 WP_283933669.1 cysteine synthase A -
  SIS06_RS16085 (SIS06_16085) pepV 3027730..3029121 (-) 1392 WP_029318264.1 dipeptidase PepV -
  SIS06_RS16090 (SIS06_16090) pbuO 3029218..3030516 (+) 1299 WP_003229234.1 hypoxanthine/guanine permease PbuO -
  SIS06_RS16095 (SIS06_16095) ythQ 3030556..3031713 (-) 1158 WP_283933670.1 ABC transporter permease -
  SIS06_RS16100 (SIS06_16100) pptA 3031710..3032420 (-) 711 WP_015714539.1 ABC transporter ATP-binding protein Regulator
  SIS06_RS16105 (SIS06_16105) ytzE 3032710..3032931 (+) 222 WP_003152337.1 DeoR family transcriptional regulator -
  SIS06_RS16110 (SIS06_16110) rsuA 3033053..3033772 (-) 720 WP_014480587.1 pseudouridine synthase -
  SIS06_RS16115 (SIS06_16115) murJ 3033841..3035475 (-) 1635 WP_283933671.1 lipid II flippase MurJ -
  SIS06_RS16120 (SIS06_16120) ytfP 3035679..3036941 (+) 1263 WP_074794674.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26573.65 Da        Isoelectric Point: 5.5930

>NTDB_id=829865 SIS06_RS16100 WP_015714539.1 3031710..3032420(-) (pptA) [Bacillus subtilis strain H17-16]
MTNLLEASIEQAGYTSRKKVLTDVFLEVRKGELVGLIGANGAGKSTAIKAILGLSEDFKGHIAWNDCSFAYIPEHPSFYE
ELTLWEHLDLISTLHGIEEREFAHRAQSLLQTFSLDHVKHELPVTFSKGMQQKLMLIQAFLSKPDMYVIDEPFIGLDPIS
TKRFVDMLKAEKERGAGILMCTHVLDTAEKICDRFYMIEKGSLFLQGTLKDIQDKTGLEGQSLLDCFYKAVQGDRP

Nucleotide


Download         Length: 711 bp        

>NTDB_id=829865 SIS06_RS16100 WP_015714539.1 3031710..3032420(-) (pptA) [Bacillus subtilis strain H17-16]
TTGACAAATTTGCTTGAAGCTTCAATAGAACAGGCCGGGTATACAAGCCGAAAAAAAGTGCTCACCGATGTTTTTCTGGA
AGTCAGAAAAGGGGAACTAGTTGGACTGATCGGAGCTAACGGCGCCGGAAAAAGCACCGCAATCAAGGCGATACTCGGCC
TTTCAGAAGATTTTAAAGGGCATATTGCCTGGAACGACTGTTCATTTGCATATATTCCGGAGCATCCGTCCTTTTACGAA
GAACTGACGCTGTGGGAGCATTTGGATCTGATCAGCACACTCCACGGCATTGAAGAGAGAGAATTTGCGCATCGGGCCCA
AAGCCTGCTGCAGACGTTTTCGCTTGATCATGTCAAACATGAGCTGCCTGTCACCTTTTCGAAGGGCATGCAGCAAAAAC
TAATGCTTATCCAGGCCTTTCTCTCTAAGCCGGATATGTATGTGATTGATGAACCGTTTATCGGCCTTGATCCGATATCG
ACGAAACGCTTTGTGGACATGCTTAAGGCTGAAAAAGAACGTGGAGCCGGAATTCTTATGTGCACGCATGTACTCGATAC
CGCGGAAAAAATCTGTGACAGGTTTTATATGATTGAGAAAGGTTCATTATTTCTCCAAGGCACGTTAAAAGATATTCAGG
ACAAGACCGGATTAGAGGGGCAGTCATTGCTTGACTGTTTTTATAAGGCAGTTCAAGGTGATCGGCCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(21-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

44.017

99.153

0.436
  pptA Streptococcus thermophilus LMD-9

43.59

99.153

0.432