Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   SIS06_RS07125 Genome accession   NZ_CP139188
Coordinates   1333270..1334406 (+) Length   378 a.a.
NCBI ID   WP_015252291.1    Uniprot ID   -
Organism   Bacillus subtilis strain H17-16     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1328270..1339406
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIS06_RS07105 (SIS06_07105) uxaA 1328721..1330214 (+) 1494 WP_283934282.1 UxaA family hydrolase -
  SIS06_RS07110 (SIS06_07110) yjnA 1330253..1331017 (-) 765 WP_003245643.1 sulfite exporter TauE/SafE family protein -
  SIS06_RS07115 (SIS06_07115) bstD 1331241..1331705 (-) 465 WP_014479541.1 DinB family protein -
  SIS06_RS07120 (SIS06_07120) yjoB 1331854..1333125 (+) 1272 WP_283934283.1 ATPase YjoB -
  SIS06_RS07125 (SIS06_07125) rapC 1333270..1334406 (+) 1137 WP_015252291.1 response regulator aspartate phosphatase RapA Regulator
  SIS06_RS07130 (SIS06_07130) phrA 1334396..1334530 (+) 135 WP_128747066.1 phosphatase RapA inhibitor PhrA -
  SIS06_RS07135 (SIS06_07135) yjpA 1334560..1334817 (-) 258 WP_003232731.1 YciI family protein -
  SIS06_RS07140 (SIS06_07140) xlyB 1334938..1335891 (+) 954 WP_014479545.1 N-acetylmuramoyl-L-alanine amidase -
  SIS06_RS07145 (SIS06_07145) yjqA 1335931..1336308 (-) 378 WP_014479546.1 PH domain-containing protein -
  SIS06_RS07150 (SIS06_07150) pghB 1336414..1337016 (+) 603 WP_003232725.1 poly-gamma-glutamate hydrolase family protein -
  SIS06_RS07155 (SIS06_07155) xpdC 1337093..1337929 (+) 837 WP_003245071.1 manganese catalase family protein -
  SIS06_RS07160 (SIS06_07160) xkdA 1337973..1338569 (-) 597 WP_015715727.1 ImmA/IrrE family metallo-endopeptidase -
  SIS06_RS07165 (SIS06_07165) xre 1338732..1339073 (-) 342 WP_003232719.1 HTH-type transcriptional regulator Xre -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 45046.23 Da        Isoelectric Point: 4.7218

>NTDB_id=829797 SIS06_RS07125 WP_015252291.1 1333270..1334406(+) (rapC) [Bacillus subtilis strain H17-16]
MRMKQTIPSSYVGLKINEWYTHIRQFHVAEAERVKLEVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPFGEDTSQLE
FSELLEDIEGNQYKLTGLLEYYFNFFRGMYEFKQKMFVSAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQMYETYTVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKKEGNPRLISSALYNLGNCYEKMGELQK
AAEYFEKSVSICKSEKFDNLPHSIYSLTQVLYKQKNDAEAQKKYREGLEIARQYSDELFVELFQFLHALYGKNIDTESVS
HTFQFLEEHMLYPYIEELAHDAAQFYIENGQPEKALSFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=829797 SIS06_RS07125 WP_015252291.1 1333270..1334406(+) (rapC) [Bacillus subtilis strain H17-16]
TTGAGGATGAAGCAGACGATTCCGTCCTCTTATGTCGGGCTTAAAATTAATGAATGGTATACTCATATCCGGCAGTTCCA
CGTCGCTGAAGCCGAACGGGTCAAGCTCGAAGTAGAAAGAGAAATTGAGGATATGGAAGAAGACCAAGATTTGCTGCTGT
ATTATTCTTTAATGGAGTTCAGGCATCGTGTCATGCTGGATTACATTAAGCCTTTTGGAGAGGACACGTCGCAGCTGGAG
TTTTCAGAATTATTAGAAGACATCGAAGGGAATCAGTACAAGCTGACAGGGCTTCTCGAATATTACTTTAATTTTTTTCG
AGGAATGTATGAATTTAAGCAGAAGATGTTTGTCAGTGCCATGATGTACTATAAACGGGCAGAAAAGAATCTTGCCCTCG
TCTCGGATGATATTGAGAAAGCCGAGTTTGCTTTTAAAATGGCTGAGATTTTTTACAATTTAAAACAAACCTATGTTTCG
ATGAGCTACGCCGTTCAGGCATTAGAAACATACCAAATGTATGAAACGTACACCGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGTAATTATGATGATATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTGGCTTTAGATCTTGCAAAGA
AAGAAGGCAATCCCCGCCTGATCAGTTCCGCCCTGTATAATCTCGGAAACTGCTATGAGAAAATGGGTGAACTGCAAAAG
GCAGCCGAATACTTTGAGAAATCTGTTTCTATTTGCAAGTCGGAAAAGTTCGATAATCTTCCGCATTCTATCTACTCTTT
AACACAAGTTCTGTATAAACAAAAAAATGACGCCGAAGCGCAAAAAAAGTATCGTGAAGGATTGGAAATCGCCCGTCAAT
ACAGTGATGAATTATTTGTGGAGCTTTTTCAATTTTTACATGCGTTATACGGAAAAAACATTGACACAGAATCGGTCTCA
CACACCTTTCAATTTCTTGAAGAACATATGCTGTATCCTTATATTGAGGAGCTGGCGCATGATGCTGCCCAATTCTATAT
TGAAAACGGACAGCCCGAAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATT
GTTTATATGAAATCTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)

Tetratricopeptide repeat (TPR_12)

(221-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.947

99.471

0.447
  rapF Bacillus subtilis subsp. subtilis str. 168

41.689

100

0.418