Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   SIS06_RS06875 Genome accession   NZ_CP139188
Coordinates   1284847..1285182 (-) Length   111 a.a.
NCBI ID   WP_283934261.1    Uniprot ID   -
Organism   Bacillus subtilis strain H17-16     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1279847..1290182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIS06_RS06850 (SIS06_06850) - 1280235..1280480 (-) 246 WP_283934257.1 hypothetical protein -
  SIS06_RS22150 - 1280668..1280778 (-) 111 WP_349643290.1 helix-turn-helix domain-containing protein -
  SIS06_RS06855 (SIS06_06855) - 1281583..1281849 (+) 267 WP_014114929.1 hypothetical protein -
  SIS06_RS06860 (SIS06_06860) - 1281900..1282631 (+) 732 WP_283934258.1 putative immunity/bacteriocin fusion bifunctional protein -
  SIS06_RS06865 (SIS06_06865) - 1282977..1283663 (-) 687 WP_283934259.1 hypothetical protein -
  SIS06_RS06870 (SIS06_06870) - 1284290..1284877 (-) 588 WP_283934260.1 hypothetical protein -
  SIS06_RS06875 (SIS06_06875) rapC 1284847..1285182 (-) 336 WP_283934261.1 hypothetical protein Regulator
  SIS06_RS06880 (SIS06_06880) - 1285221..1285451 (-) 231 WP_283934262.1 hypothetical protein -
  SIS06_RS06885 (SIS06_06885) yjcS 1285699..1286016 (+) 318 WP_072692634.1 putative quinol monooxygenase -
  SIS06_RS06890 (SIS06_06890) yjdA 1286257..1287012 (+) 756 WP_113712997.1 SDR family oxidoreductase -
  SIS06_RS06895 (SIS06_06895) yjdB 1287172..1287519 (-) 348 WP_003232839.1 Ig-like domain-containing protein -
  SIS06_RS06900 (SIS06_06900) manR 1288081..1290027 (+) 1947 WP_283934263.1 mannose transport/utilization transcriptional regulator ManR -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 13316.06 Da        Isoelectric Point: 6.2222

>NTDB_id=829796 SIS06_RS06875 WP_283934261.1 1284847..1285182(-) (rapC) [Bacillus subtilis strain H17-16]
MAPESLTNTIEFYYHFFTGMYHFRTRDLVIALTYYREAEKYLDLLDKNANTDKAEFYFKMSEVYYYMKETHFSMNYAQRA
YSIFKEQKDAQGNLTYGKEMVQCQFVTLGTG

Nucleotide


Download         Length: 336 bp        

>NTDB_id=829796 SIS06_RS06875 WP_283934261.1 1284847..1285182(-) (rapC) [Bacillus subtilis strain H17-16]
ATGGCCCCTGAATCCCTCACCAATACAATAGAGTTCTATTATCATTTTTTTACCGGCATGTATCATTTTAGAACGAGAGA
TTTAGTTATTGCTTTAACATATTATCGCGAAGCCGAAAAATATCTTGATTTATTAGATAAGAACGCAAATACAGATAAGG
CAGAGTTCTATTTCAAAATGTCAGAAGTCTATTACTATATGAAAGAGACTCATTTTTCAATGAATTATGCCCAGCGAGCA
TACTCTATATTTAAAGAGCAAAAAGATGCTCAGGGGAACCTTACGTATGGCAAGGAAATGGTCCAATGTCAGTTTGTTAC
TTTGGGAACTGGCTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.574

90.991

0.387
  rapF Bacillus subtilis subsp. subtilis str. 168

42.857

88.288

0.378