Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   SKB19_RS09070 Genome accession   NZ_CP139177
Coordinates   1870088..1871515 (-) Length   475 a.a.
NCBI ID   WP_072305157.1    Uniprot ID   -
Organism   Escherichia coli strain JX21CE33     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1865088..1876515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SKB19_RS09040 (SKB19_09040) yeeZ 1865143..1865967 (+) 825 WP_000754749.1 SDR family oxidoreductase -
  SKB19_RS09045 (SKB19_09045) yeeY 1866013..1866942 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  SKB19_RS09050 (SKB19_09050) yoeI 1867157..1867219 (+) 63 WP_010723108.1 membrane protein YoeI -
  SKB19_RS09055 (SKB19_09055) plaP 1867209..1868567 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  SKB19_RS09060 (SKB19_09060) tsuA 1868746..1869804 (+) 1059 WP_061350760.1 thiosulfate utilization transporter TsuA/YeeE -
  SKB19_RS09065 (SKB19_09065) tsuB 1869818..1870045 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  SKB19_RS09070 (SKB19_09070) sbcB 1870088..1871515 (-) 1428 WP_072305157.1 exodeoxyribonuclease I Machinery gene
  SKB19_RS09075 (SKB19_09075) dacD 1871724..1872890 (+) 1167 WP_000830156.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  SKB19_RS09080 (SKB19_09080) sbmC 1873009..1873482 (+) 474 WP_001105415.1 DNA gyrase inhibitor SbmC -
  SKB19_RS09085 (SKB19_09085) yeeA 1873680..1874738 (+) 1059 WP_001200905.1 FUSC family protein -
  SKB19_RS09090 (SKB19_09090) tmaR 1874910..1875239 (+) 330 WP_000450409.1 DUF496 family protein -
  SKB19_RS09095 (SKB19_09095) - 1875340..1875522 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  SKB19_RS09100 (SKB19_09100) - 1875576..1875722 (+) 147 Protein_1779 transposase domain-containing protein -
  SKB19_RS09105 (SKB19_09105) - 1876011..1876091 (-) 81 Protein_1780 hypothetical protein -
  SKB19_RS09110 (SKB19_09110) yeeW 1876137..1876331 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54414.68 Da        Isoelectric Point: 5.6054

>NTDB_id=829617 SKB19_RS09070 WP_072305157.1 1870088..1871515(-) (sbcB) [Escherichia coli strain JX21CE33]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETGPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDREKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=829617 SKB19_RS09070 WP_072305157.1 1870088..1871515(-) (sbcB) [Escherichia coli strain JX21CE33]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCTGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGGGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAGGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAGAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583