Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   SJH97_RS29830 Genome accession   NZ_CP139175
Coordinates   6500508..6502772 (-) Length   754 a.a.
NCBI ID   WP_320587709.1    Uniprot ID   -
Organism   Streptomyces sp. CL7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6495508..6507772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SJH97_RS29805 (SJH97_29805) - 6496068..6497108 (+) 1041 WP_320587705.1 LacI family DNA-binding transcriptional regulator -
  SJH97_RS29810 (SJH97_29810) - 6497219..6498013 (+) 795 WP_320587706.1 VOC family protein -
  SJH97_RS29815 (SJH97_29815) - 6498162..6498410 (+) 249 WP_228918083.1 WhiB family transcriptional regulator -
  SJH97_RS29820 (SJH97_29820) - 6498432..6499406 (-) 975 WP_320587707.1 acyl-ACP desaturase -
  SJH97_RS29825 (SJH97_29825) ddaH 6499578..6500354 (-) 777 WP_320587708.1 dimethylargininase -
  SJH97_RS29830 (SJH97_29830) uvrA 6500508..6502772 (-) 2265 WP_320587709.1 excinuclease ABC subunit UvrA Machinery gene
  SJH97_RS29835 (SJH97_29835) - 6502783..6504405 (-) 1623 WP_320587710.1 ABC-F family ATP-binding cassette domain-containing protein -
  SJH97_RS29840 (SJH97_29840) - 6504728..6505342 (+) 615 WP_320587711.1 GOLPH3/VPS74 family protein -
  SJH97_RS29845 (SJH97_29845) - 6505427..6505840 (-) 414 WP_320587712.1 SsgA family sporulation/cell division regulator -
  SJH97_RS29850 (SJH97_29850) - 6506142..6507215 (+) 1074 WP_320587713.1 oxidoreductase -
  SJH97_RS29855 (SJH97_29855) - 6507307..6507630 (+) 324 WP_093764080.1 plasmid stabilization protein -

Sequence

Protein


Download         Length: 754 a.a.        Molecular weight: 81069.73 Da        Isoelectric Point: 6.3710

>NTDB_id=829582 SJH97_RS29830 WP_320587709.1 6500508..6502772(-) (uvrA) [Streptomyces sp. CL7]
MTQQDTFITLTGATENNLKDVSLRIPTGRLTVFTGVSGSGKSSVVFDTIAVESQRQLNETYTWFVRNRLPKYERPHARAL
ENLTPVIVIDQRPVGGHSRSTVGTMTDVHSVLRVLFSRHGTPSAGPATAYSFNDPSGMCPGCDGLGRTVRPDWDRILDPD
RSLAEGAVRFPPFAPGTWQGQAYTSSEDLDPHKPVRRFTPAEREFLMRGRPGSKVTVQGTGGTWTTAYEGLADRFERLYL
KRDLEGMSQKTRDLVREFLTEGVCPDCGGARLNEAALASRIDGRNIADLSAMQVCDLIPVLREIDDPVAGPVAAAAVAAL
ERIERIGLGYLSLDRETSTLSGGEGQRLKTVRHLGSSLTGMTYVFDEPSVGLHPRDVHRLGELLLRLRDKGNTVLVVEHD
PDVIALADHVVDMGPGGGAEGGRVVFEGTPRELAASGTLTGRCLGRRTEVKTEVRTPTGELWVKGADRHNLRDVTVCFPA
GVLTAVTGVAGSGKSSLVAEFTDAHPEAVVVDQSSIGISGRSTPATYLGIMDTVRKIFARETGAEPGLFSFNSTGACGTC
GGRGILYTDLAFMDPVTTTCPDCEGRRFGEEVLRLTVGGRSVADVLEMTAGEALDFFHDPGVRRRLRALRDVGLTYLTLG
QPLSTLSGGERQRLKLATRLHRDGAVYVLDEPTTGLHMADVDGLLGLLDRLVDAGNTVVVVEHNLQVVACADRVIDLGPG
GGRDGGRVVFEGTPAELLRAPGSYTGEHLRRTVG

Nucleotide


Download         Length: 2265 bp        

>NTDB_id=829582 SJH97_RS29830 WP_320587709.1 6500508..6502772(-) (uvrA) [Streptomyces sp. CL7]
ATGACCCAGCAGGACACCTTCATCACCCTCACCGGGGCCACCGAGAACAACCTCAAGGACGTCTCGCTCCGCATCCCGAC
GGGCCGGCTGACCGTGTTCACCGGCGTCTCGGGATCGGGGAAGTCGTCGGTCGTCTTCGACACGATCGCGGTCGAGTCGC
AGCGGCAGCTGAACGAGACGTACACCTGGTTCGTGCGCAACCGGCTGCCCAAGTACGAGCGGCCGCACGCGCGGGCCCTG
GAGAACCTGACGCCGGTGATCGTCATCGACCAGCGGCCGGTCGGCGGCCACTCCCGGTCCACGGTGGGGACGATGACGGA
CGTGCACTCGGTGCTGCGGGTGCTGTTCTCCCGGCACGGCACCCCGAGCGCGGGCCCGGCGACCGCGTACTCGTTCAACG
ACCCCTCGGGCATGTGCCCCGGCTGCGACGGCCTGGGCCGGACCGTGCGGCCGGACTGGGACCGCATCCTCGACCCGGAC
CGCTCCCTCGCCGAGGGGGCGGTCCGGTTCCCGCCGTTCGCGCCGGGCACCTGGCAGGGGCAGGCCTACACCAGCAGCGA
GGACCTGGACCCGCACAAACCGGTGCGCCGGTTCACGCCCGCCGAGCGGGAGTTCCTGATGCGGGGGCGGCCCGGCAGCA
AGGTCACCGTGCAGGGGACGGGCGGCACCTGGACCACCGCGTACGAGGGGCTGGCCGACCGCTTCGAACGGCTGTATCTG
AAGCGGGATCTGGAGGGGATGAGCCAGAAGACCCGTGACCTGGTGCGGGAGTTCCTCACCGAGGGCGTCTGCCCCGACTG
CGGCGGCGCGCGGCTGAACGAGGCGGCGCTGGCCTCCCGGATCGACGGCCGGAACATCGCCGACCTGTCGGCGATGCAGG
TGTGCGACCTGATCCCGGTGCTGCGGGAGATCGACGACCCGGTGGCCGGGCCGGTCGCCGCGGCCGCCGTCGCCGCGCTG
GAGCGGATCGAGCGCATCGGCCTCGGCTATCTCTCCCTCGACCGGGAGACGTCCACGCTCTCCGGCGGCGAGGGCCAGCG
GCTGAAGACCGTACGGCACCTGGGCTCCAGCCTGACCGGGATGACGTACGTCTTCGACGAGCCGAGCGTCGGGCTGCACC
CGCGGGACGTGCACCGGCTGGGCGAACTGCTGCTGCGGCTGCGGGACAAGGGCAACACCGTGCTGGTCGTCGAACACGAT
CCGGACGTCATCGCGCTGGCCGACCACGTCGTCGACATGGGGCCGGGCGGGGGCGCAGAGGGCGGCCGCGTCGTCTTCGA
GGGGACACCGCGGGAGCTGGCCGCGTCCGGCACGCTCACGGGACGCTGCCTCGGCCGGCGTACGGAGGTGAAGACCGAGG
TACGCACCCCGACCGGCGAGTTGTGGGTGAAGGGGGCGGACCGGCACAACCTGCGGGACGTCACCGTGTGCTTCCCGGCA
GGGGTGCTGACCGCGGTGACCGGGGTGGCGGGGTCCGGGAAGAGCAGCCTGGTCGCCGAGTTCACCGACGCGCACCCGGA
GGCCGTGGTGGTCGACCAGTCGTCCATCGGCATCTCCGGACGGTCCACCCCGGCCACCTACCTGGGGATCATGGACACCG
TGCGGAAGATCTTCGCGCGGGAGACGGGCGCGGAGCCGGGGCTGTTCAGCTTCAACTCCACCGGCGCCTGCGGGACCTGC
GGCGGCCGGGGGATCCTTTACACCGACCTGGCGTTCATGGACCCGGTGACCACCACCTGCCCGGACTGCGAGGGTCGGCG
GTTCGGCGAGGAAGTGCTGCGGCTGACCGTCGGCGGGCGGTCCGTCGCCGACGTGCTGGAGATGACCGCGGGCGAGGCCC
TGGACTTCTTCCACGACCCGGGCGTACGGCGACGGCTGCGCGCCCTGCGGGACGTAGGCCTCACCTACCTCACACTCGGC
CAGCCGCTGTCCACCCTGTCCGGCGGGGAGCGGCAGCGGCTGAAGCTGGCCACCCGGCTGCACCGGGACGGCGCGGTGTA
CGTGCTGGACGAGCCGACGACCGGGCTGCACATGGCGGACGTGGACGGTCTGCTCGGCCTGCTGGACCGGCTGGTGGACG
CGGGCAACACGGTGGTCGTGGTCGAGCACAACCTTCAGGTGGTGGCGTGCGCGGACCGGGTGATCGACCTGGGGCCGGGC
GGCGGGAGGGACGGCGGCCGGGTGGTGTTCGAGGGCACGCCGGCCGAGCTGCTGCGGGCGCCGGGGTCGTACACCGGGGA
GCATCTGCGGCGGACCGTGGGCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(471-673)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

38.149

94.562

0.361
  uvrA Streptococcus pneumoniae TIGR4

38.149

94.562

0.361
  uvrA Streptococcus pneumoniae D39

38.149

94.562

0.361