Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   SJH97_RS27975 Genome accession   NZ_CP139175
Coordinates   6059105..6059779 (+) Length   224 a.a.
NCBI ID   WP_320587422.1    Uniprot ID   -
Organism   Streptomyces sp. CL7     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6054105..6064779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SJH97_RS27950 (SJH97_27950) alc 6054777..6055892 (+) 1116 WP_320587418.1 allantoicase -
  SJH97_RS27955 (SJH97_27955) - 6055949..6056701 (-) 753 WP_320587419.1 SDR family NAD(P)-dependent oxidoreductase -
  SJH97_RS27960 (SJH97_27960) - 6056929..6057318 (+) 390 WP_320588497.1 ribonuclease domain-containing protein -
  SJH97_RS27965 (SJH97_27965) - 6057344..6057547 (-) 204 WP_320587420.1 hypothetical protein -
  SJH97_RS27970 (SJH97_27970) - 6057727..6058974 (+) 1248 WP_320587421.1 sensor histidine kinase -
  SJH97_RS27975 (SJH97_27975) vraR 6059105..6059779 (+) 675 WP_320587422.1 response regulator transcription factor Regulator
  SJH97_RS27980 (SJH97_27980) - 6059812..6060246 (+) 435 WP_320587423.1 PaaI family thioesterase -
  SJH97_RS27985 (SJH97_27985) - 6060306..6061328 (-) 1023 WP_320587424.1 Gfo/Idh/MocA family oxidoreductase -
  SJH97_RS27990 (SJH97_27990) - 6061457..6062194 (+) 738 WP_320588498.1 GntR family transcriptional regulator -
  SJH97_RS27995 (SJH97_27995) - 6062440..6063588 (+) 1149 WP_093766061.1 ROK family glucokinase -
  SJH97_RS28000 (SJH97_28000) - 6063585..6064181 (+) 597 WP_320587425.1 sugar kinase -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 23575.08 Da        Isoelectric Point: 5.3603

>NTDB_id=829579 SJH97_RS27975 WP_320587422.1 6059105..6059779(+) (vraR) [Streptomyces sp. CL7]
MTAIKVLLVDDDPLVRAGLSFMLGGAEDIEIVGEAADGAEVTALVDRTRPDVVLMDIRMPSVDGLTATEALRRREDAPQV
VVLTTFHADDQVLRALRAGAAGFVLKDTPPAEIVAAVRRVAAGDPVLSPAVTRQLMAHAAGGPGDTRRARARDRVAALND
REREVAVAVGRGLANAEIAAELYMSVATVKTHVSRVLAKLGLNNRVQIALLAHDAGLLEGTDSL

Nucleotide


Download         Length: 675 bp        

>NTDB_id=829579 SJH97_RS27975 WP_320587422.1 6059105..6059779(+) (vraR) [Streptomyces sp. CL7]
ATGACCGCCATCAAAGTGCTCCTCGTCGACGACGACCCCCTCGTCCGCGCCGGCCTCTCCTTCATGCTCGGCGGCGCCGA
GGACATCGAGATCGTAGGAGAGGCCGCCGACGGCGCCGAGGTCACCGCGCTCGTCGACCGCACCCGCCCGGACGTCGTCC
TCATGGACATCCGCATGCCCTCCGTCGACGGCCTCACCGCCACCGAGGCGCTGCGCCGCCGCGAGGACGCCCCGCAGGTC
GTCGTGCTCACCACCTTCCACGCCGACGACCAGGTGCTGCGCGCGCTCCGCGCGGGCGCGGCCGGGTTCGTGCTGAAGGA
CACCCCGCCCGCCGAGATCGTCGCCGCGGTGCGCCGCGTCGCGGCCGGCGACCCGGTGCTCTCACCCGCGGTCACCCGGC
AGCTGATGGCGCACGCGGCCGGCGGCCCGGGAGACACCCGGCGGGCCCGCGCCCGCGACCGCGTCGCCGCCCTCAACGAC
CGCGAACGCGAGGTCGCCGTGGCCGTCGGCCGGGGTCTCGCCAACGCGGAGATCGCCGCCGAGCTGTACATGAGCGTGGC
CACCGTGAAGACGCACGTCTCGCGCGTCCTTGCCAAGCTCGGCCTCAACAACCGCGTCCAGATCGCGCTGCTCGCCCATG
ACGCGGGGCTGCTGGAGGGCACCGACAGCCTCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(157-212)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.557

98.661

0.371