Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   SJH97_RS22120 Genome accession   NZ_CP139175
Coordinates   4750064..4751038 (+) Length   324 a.a.
NCBI ID   WP_189912577.1    Uniprot ID   -
Organism   Streptomyces sp. CL7     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 4745064..4756038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SJH97_RS22100 (SJH97_22100) - 4745204..4746328 (+) 1125 WP_320586564.1 ABC transporter ATP-binding protein -
  SJH97_RS22105 (SJH97_22105) - 4746535..4748157 (+) 1623 WP_320586565.1 peptide ABC transporter substrate-binding protein -
  SJH97_RS22110 (SJH97_22110) - 4748164..4749087 (+) 924 WP_320586566.1 ABC transporter permease -
  SJH97_RS22115 (SJH97_22115) - 4749080..4750057 (+) 978 WP_320586567.1 ABC transporter permease -
  SJH97_RS22120 (SJH97_22120) amiE 4750064..4751038 (+) 975 WP_189912577.1 ABC transporter ATP-binding protein Regulator
  SJH97_RS22125 (SJH97_22125) amiE 4751031..4752065 (+) 1035 WP_320586568.1 ABC transporter ATP-binding protein Regulator
  SJH97_RS22130 (SJH97_22130) - 4752187..4754325 (-) 2139 WP_320586569.1 prolyl oligopeptidase family serine peptidase -
  SJH97_RS22135 (SJH97_22135) - 4754502..4754696 (+) 195 WP_093766889.1 hypothetical protein -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 35673.22 Da        Isoelectric Point: 6.4996

>NTDB_id=829555 SJH97_RS22120 WP_189912577.1 4750064..4751038(+) (amiE) [Streptomyces sp. CL7]
MLLEVRDLHVEFRTRDGVAKAVNGVTYGVDEGETLAVLGESGSGKSVTAQAVMGILDTPPGRVTGGEVVFQGRDLLTLKE
EERRRIRGAEMAMIFQDALSALNPVLTVGDQLAEMFTVHRGMSRKDARAKAVELMDRVRIPAARERVRQYPHQFSGGMRQ
RIMIAMAIALEPALIIADEPTTALDVTVQAQVMELLAELQREYRMGLILITHDLGVVADVADRIAVMYAGRIVESAPVHD
IYKAPAHPYTRGLLDSIPRLDQKGRELYAIKGLPPNLTRIPPGCPFHPRCPLARDVCTTDDPPLYEVSGTRGSACHFWRE
CLDG

Nucleotide


Download         Length: 975 bp        

>NTDB_id=829555 SJH97_RS22120 WP_189912577.1 4750064..4751038(+) (amiE) [Streptomyces sp. CL7]
GTGCTGCTCGAAGTGCGCGACCTGCACGTGGAGTTCCGGACCCGGGACGGGGTGGCGAAGGCGGTCAACGGGGTCACCTA
CGGCGTGGACGAGGGGGAGACCCTGGCCGTGCTGGGCGAGTCCGGCTCCGGCAAGTCGGTGACCGCGCAGGCGGTCATGG
GCATCCTCGACACCCCGCCGGGACGCGTCACCGGCGGCGAGGTGGTCTTCCAGGGGCGGGACCTGCTGACGCTCAAGGAG
GAGGAGCGCCGGCGGATCCGGGGCGCCGAGATGGCGATGATCTTCCAGGACGCGCTGTCCGCCCTGAACCCGGTGCTCAC
CGTCGGCGACCAGCTCGCCGAGATGTTCACCGTGCACCGGGGCATGTCCCGCAAGGACGCGCGGGCCAAGGCGGTCGAGC
TGATGGACCGGGTGCGCATCCCGGCCGCGCGGGAGCGGGTGAGGCAGTACCCGCACCAGTTCTCCGGCGGCATGCGCCAG
CGCATCATGATCGCGATGGCGATCGCCCTGGAGCCGGCGCTGATCATCGCCGACGAGCCGACCACCGCCCTCGACGTCAC
CGTCCAGGCCCAGGTGATGGAGCTGCTCGCGGAGCTCCAGCGGGAGTATCGGATGGGGCTCATCCTCATCACCCACGACC
TGGGCGTGGTCGCCGACGTCGCCGACCGCATCGCCGTGATGTACGCGGGGCGGATCGTGGAGTCGGCGCCGGTGCACGAC
ATCTACAAGGCCCCGGCGCACCCTTACACCCGGGGCCTGCTGGACTCCATCCCGCGCCTGGACCAGAAGGGCCGGGAGCT
GTACGCCATCAAGGGCCTGCCGCCCAATCTCACCCGCATCCCGCCGGGCTGCCCCTTCCACCCGCGCTGCCCGCTGGCCC
GGGACGTGTGCACCACCGACGACCCGCCGCTGTACGAGGTCTCCGGCACACGCGGGAGCGCCTGCCACTTCTGGAGGGAG
TGCCTGGATGGCTGA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-297)

ABC transporter (ABC_tran)

(23-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

46.417

99.074

0.46
  amiE Streptococcus thermophilus LMG 18311

45.794

99.074

0.454
  amiE Streptococcus thermophilus LMD-9

45.794

99.074

0.454
  oppD Streptococcus mutans UA159

45.86

96.914

0.444