Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   SJH97_RS18685 Genome accession   NZ_CP139175
Coordinates   4032097..4033509 (-) Length   470 a.a.
NCBI ID   WP_320586101.1    Uniprot ID   -
Organism   Streptomyces sp. CL7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4027097..4038509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SJH97_RS18665 (SJH97_18665) - 4028457..4029122 (+) 666 WP_093764615.1 response regulator transcription factor -
  SJH97_RS18670 (SJH97_18670) - 4029130..4029774 (-) 645 WP_320586099.1 phosphatase PAP2 family protein -
  SJH97_RS18675 (SJH97_18675) - 4029949..4030818 (+) 870 WP_320586100.1 hypothetical protein -
  SJH97_RS18680 (SJH97_18680) disA 4030903..4032027 (-) 1125 WP_031020135.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  SJH97_RS18685 (SJH97_18685) radA 4032097..4033509 (-) 1413 WP_320586101.1 DNA repair protein RadA Machinery gene
  SJH97_RS18690 (SJH97_18690) - 4033772..4035553 (+) 1782 WP_320586102.1 BACON domain-containing protein -
  SJH97_RS18695 (SJH97_18695) - 4035666..4036538 (-) 873 WP_093764620.1 hypothetical protein -
  SJH97_RS18700 (SJH97_18700) - 4036634..4037566 (+) 933 WP_320586103.1 Ppx/GppA phosphatase family protein -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 49840.88 Da        Isoelectric Point: 7.7530

>NTDB_id=829549 SJH97_RS18685 WP_320586101.1 4032097..4033509(-) (radA) [Streptomyces sp. CL7]
MAARTKTSKDRPSYRCTECGWQTAKWLGRCPECQAWGTVEEYGAAPAVRTTAPGRVTTSALPIGQVDGRQATARSTGVPE
LDRVLGGGLVPGAVVLVAGEPGVGKSTLLLDVAAKSASDEHRTLYVTGEESASQVRLRADRIHAIDDHLYLAAETDLAAV
LGHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLH
FEGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGRRPLVAEVQALTVDSQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAVALALASAASDTPLPKNLVAIGEVG
LAGEVRRVTGVQRRLAEAHRLGFTHALVPGDPGKVPAGMQVREVADIGDALRVLPRSRRREAPREPEDRR

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=829549 SJH97_RS18685 WP_320586101.1 4032097..4033509(-) (radA) [Streptomyces sp. CL7]
ATGGCTGCCCGTACCAAGACCTCCAAGGACCGTCCGTCCTACCGCTGCACCGAGTGCGGATGGCAGACGGCCAAGTGGCT
CGGGCGGTGTCCCGAGTGCCAGGCATGGGGGACGGTCGAGGAGTACGGTGCGGCGCCCGCCGTGCGGACGACCGCGCCGG
GGCGGGTCACCACGTCCGCGCTGCCCATCGGGCAGGTCGACGGGCGGCAGGCCACCGCCCGCTCCACGGGCGTGCCCGAG
CTGGACCGGGTGCTCGGCGGCGGGCTGGTGCCCGGCGCCGTGGTGCTGGTCGCGGGCGAGCCGGGTGTGGGCAAGTCCAC
CCTGCTGCTGGACGTCGCCGCCAAGTCCGCGAGCGACGAGCACCGCACCCTGTACGTCACGGGTGAGGAGTCGGCGAGTC
AGGTCCGTCTGCGCGCCGACCGTATCCACGCCATCGACGACCACCTCTATCTCGCCGCCGAGACGGATCTCGCCGCCGTC
CTCGGGCACTTGGACGCGGTGAAGCCGTCGCTGCTGATCCTGGACTCGGTGCAGACGGTCGCGTCCCCCGAGATCGACGG
CGCGCCGGGCGGCATGGCCCAGGTGCGCGAGGTGGCGGGCGCGCTGATCCGCGCCTCCAAGGAGCGCGGGATGTCCACGC
TCCTCGTGGGACACGTCACCAAGGACGGCGCCATCGCGGGCCCCCGCCTCCTGGAGCACCTGGTGGACGTGGTGCTGCAC
TTCGAGGGCGACCGGCACGCCCGTCTGCGTCTGGTCCGCGGCGTCAAGAACCGCTACGGCACGACCGACGAGGTCGGCTG
CTTCGAACTGCACGACGAGGGCATCACGGGCCTCGCGGACCCCAGCGGACTTTTCCTGACCCGTCGTGACGAACCGGTCC
CGGGCACCTGTCTGACCGTCACCCTGGAGGGCCGCCGCCCCTTGGTCGCCGAGGTGCAGGCGCTCACCGTGGACTCGCAG
ATCCCCTCCCCCCGCCGCACCACCTCAGGCCTGGAGACCTCCCGCGTCTCGATGATGCTGGCCGTACTGGAACAGCGCGG
CCGGATCAGCGCCTTGGGCAAAAGGGACATCTACTCCGCGACGGTCGGCGGTGTGAAGCTCTCCGAGCCGGCCGCGGACC
TGGCCGTCGCGCTCGCCCTGGCCTCCGCCGCGAGCGACACCCCGCTGCCCAAGAACCTCGTCGCGATCGGCGAAGTCGGC
CTCGCGGGCGAGGTGAGACGCGTCACGGGCGTGCAGCGCAGGCTCGCCGAGGCGCACCGCCTGGGCTTCACGCACGCCCT
GGTGCCGGGCGACCCGGGCAAGGTTCCGGCGGGCATGCAGGTACGGGAAGTGGCGGACATAGGGGACGCGCTGCGGGTCC
TTCCCCGGTCCCGTCGGCGAGAGGCCCCACGGGAGCCGGAGGACCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(79-223)

Subunit ChlI of Mg-chelatase (ChlI)

(370-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

43.046

96.383

0.415
  radA Streptococcus mitis NCTC 12261

43.046

96.383

0.415
  radA Streptococcus pneumoniae R6

42.826

96.383

0.413
  radA Streptococcus pneumoniae Rx1

42.826

96.383

0.413
  radA Streptococcus pneumoniae TIGR4

42.826

96.383

0.413
  radA Streptococcus pneumoniae D39

42.826

96.383

0.413
  radA/sms Bacillus subtilis subsp. subtilis str. 168

42.605

96.383

0.411