Detailed information NTG0829541

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: SJH97_RS17720
• Genome accession: NZ_CP139175
• Coordinates: 3827965..3830562 (+)
• Length: 865 a.a.
• NCBI ID: WP_320585960.1
• Uniprot ID: -
• Organism: Streptomyces sp. CL7
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3822965..3835562

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SJH97_RS17695 (SJH97_17695)	-	3823579..3824610 (+)	1032	WP_320585958.1	helix-turn-helix transcriptional regulator	-
SJH97_RS17700 (SJH97_17700)	-	3824573..3825571 (-)	999	WP_320585959.1	helix-turn-helix transcriptional regulator	-
SJH97_RS17705 (SJH97_17705)	-	3825568..3826587 (-)	1020	WP_244353604.1	helix-turn-helix domain-containing protein	-
SJH97_RS17710 (SJH97_17710)	-	3826901..3827236 (+)	336	WP_093764454.1	hypothetical protein	-
SJH97_RS17715 (SJH97_17715)	-	3827415..3827831 (-)	417	WP_093764455.1	pyridoxamine 5'-phosphate oxidase family protein	-
SJH97_RS17720 (SJH97_17720)	clpC	3827965..3830562 (+)	2598	WP_320585960.1	ATP-dependent chaperone ClpB	Regulator
SJH97_RS17725 (SJH97_17725)	-	3830753..3831283 (+)	531	WP_048457056.1	YbjN domain-containing protein	-
SJH97_RS17730 (SJH97_17730)	-	3831432..3832040 (+)	609	WP_093764457.1	DUF1707 domain-containing protein	-
SJH97_RS17735 (SJH97_17735)	-	3832037..3832699 (-)	663	WP_320585961.1	SCO4225 family membrane protein	-
SJH97_RS17740 (SJH97_17740)	-	3832839..3833318 (-)	480	WP_320585962.1	ATP-binding protein	-
SJH97_RS17745 (SJH97_17745)	-	3833376..3834148 (+)	773	Protein_3485	helix-turn-helix domain-containing protein	-
SJH97_RS17750 (SJH97_17750)	-	3834054..3834266 (+)	213	WP_320585963.1	DUF397 domain-containing protein	-
SJH97_RS17755 (SJH97_17755)	-	3834235..3834876 (-)	642	WP_320585964.1	hypothetical protein	-

Sequence

Protein

• Length: 865 a.a.
• Molecular weight: 94449.79 Da
• Isoelectric Point: 4.6905

>NTDB_id=829541 SJH97_RS17720 WP_320585960.1 3827965..3830562(+) (clpC) [Streptomyces sp. CL7]
MDAELTNRSRDALAAAGNRAVTEGHPDLTPAHLLLALLAGQENENITDLLAAVDADQAAVRAGAERVLAGLPSVTGSTVA
PPQPSRELLAVVADAQSRAQDLGDEYLSTEHLLIGIAAKGGATGEVLSRQGATADKLQEAFQKARGARRVTTPDPEGQYK
ALEKFGTDLTAAAREGRLDPVIGRDQEIRRVVQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVKGDVPESLKNKRLVA
LDLGAMVAGAKYRGEFEERLKTVLAEIKDSDGQIITFIDELHTVVGAGAGGDSAMDAGNMLKPMLARGELRMVGATTLDE
YRERIEKDPALERRFQQVLVSEPSVEDSIAILRGLKGRYEAHHKVQIADSALVAAATLSDRYITSRFLPDKAIDLVDEAA
SRLRMEIDSSPVEIDELQRAVDRLRMEELALSKETDQASKERLEKLRRDLADKEEELRGLTARWEKEKQSLNRVGELKEK
LDELRGQAERAQRDGDFDTASKLLYGEIPAVERDLEAASEAEEEVAKDTMVKEEVGADDIADVVASWTGIPAGRLMEGET
QKLLRMEDEIGKRLIGQTEAVRAVSDAVRRSRAGVSDPDRPTGSFLFLGPTGVGKTELAKALADFLFDDERAMVRIDMSE
YSEKHSVARLVGAPPGYVGYEEGGQLTEAVRRRPYSVVLLDEVEKAHPEVFDILLQVLDDGRLTDGQGRTVDFRNTILVL
TSNLGSQYLVDPLSSEEEKREQVLEVVRASFKPEFLNRLDDLVVFSALTRAELERIAALQINALGRRLAERRLTLDITPE
ALQWLAEEGLDPAYGARPLRRLVQTSIGDRLAKEILSGEIKDGDTVRVDRAGDGLIVGPATGKTL

Nucleotide

• Length: 2598 bp

>NTDB_id=829541 SJH97_RS17720 WP_320585960.1 3827965..3830562(+) (clpC) [Streptomyces sp. CL7]
GTGGACGCCGAGCTGACCAACCGGAGCCGGGACGCACTGGCCGCCGCCGGCAACCGGGCCGTGACCGAGGGGCACCCCGA
CCTCACCCCCGCGCACCTGCTGCTTGCCCTGCTCGCCGGGCAGGAGAACGAGAACATCACGGACCTGCTCGCCGCGGTCG
ACGCCGACCAGGCCGCCGTACGCGCCGGGGCCGAGCGCGTCCTCGCCGGGCTGCCCAGCGTCACCGGATCCACGGTGGCG
CCGCCCCAGCCGAGCCGTGAGCTGCTCGCCGTCGTCGCGGACGCCCAGTCCCGCGCCCAGGACCTCGGCGACGAGTACCT
GTCCACCGAACACCTGCTGATCGGCATCGCCGCCAAGGGCGGGGCCACCGGCGAGGTACTGTCCCGGCAGGGCGCCACCG
CGGACAAGCTGCAGGAGGCCTTCCAGAAGGCGAGGGGAGCGCGCCGGGTGACCACTCCCGACCCGGAGGGCCAGTACAAG
GCCCTCGAGAAGTTCGGCACCGACCTGACCGCCGCCGCCCGCGAGGGCAGGCTGGACCCCGTCATCGGACGGGACCAGGA
GATCCGGCGGGTGGTGCAGGTGCTGAGCCGCCGTACCAAGAACAACCCCGTGCTGATCGGTGAGCCGGGCGTCGGCAAGA
CCGCCGTCGTCGAGGGCCTCGCCCAGCGGATCGTCAAGGGCGACGTGCCCGAGTCGCTGAAGAACAAGCGGCTGGTCGCG
CTCGACCTGGGCGCGATGGTCGCGGGCGCCAAGTACCGCGGCGAGTTCGAGGAGCGGCTGAAGACCGTGCTCGCGGAGAT
CAAGGATTCCGACGGGCAGATCATCACATTCATCGACGAGCTGCACACCGTCGTGGGCGCGGGCGCCGGCGGCGACTCCG
CCATGGACGCCGGCAACATGCTGAAGCCGATGCTCGCCCGCGGCGAGCTGCGCATGGTCGGCGCGACCACGCTGGACGAG
TACCGCGAGCGGATCGAGAAGGACCCGGCGCTGGAGCGGCGCTTCCAGCAGGTGCTGGTCTCCGAGCCGTCCGTCGAGGA
CTCCATCGCGATCCTGCGCGGCCTCAAGGGCCGTTACGAGGCGCACCACAAGGTGCAGATCGCCGACAGCGCCCTGGTCG
CCGCGGCCACCCTCTCCGACCGGTACATCACCTCCCGCTTCCTGCCGGACAAGGCCATCGACCTGGTCGACGAGGCCGCC
TCCCGGCTGCGCATGGAGATCGACTCCTCGCCCGTCGAGATCGACGAGCTCCAGCGCGCCGTGGACCGGCTGCGGATGGA
GGAGCTGGCGCTGAGCAAGGAGACGGACCAGGCGTCCAAGGAGCGTCTGGAGAAGCTGCGCCGCGACCTCGCCGACAAGG
AGGAGGAGCTGCGCGGCCTCACCGCCCGCTGGGAGAAGGAGAAGCAGTCCCTCAACCGCGTCGGTGAGCTGAAGGAGAAG
CTGGACGAGCTGCGCGGCCAGGCCGAACGCGCCCAGCGCGACGGCGACTTCGACACCGCGTCCAAGCTGCTCTACGGCGA
GATCCCGGCCGTCGAACGCGACCTGGAGGCCGCCTCCGAGGCCGAGGAAGAGGTCGCGAAGGACACCATGGTCAAGGAGG
AGGTCGGCGCCGACGACATCGCCGACGTCGTCGCCTCCTGGACCGGTATCCCGGCCGGCCGTCTGATGGAGGGCGAGACG
CAGAAGCTGCTGCGCATGGAGGACGAGATCGGCAAGCGGCTGATCGGGCAGACCGAGGCCGTGCGCGCCGTCTCCGACGC
CGTGCGGCGCTCGCGGGCCGGGGTGTCCGACCCGGACCGGCCCACCGGCTCCTTCCTGTTCCTCGGCCCGACCGGTGTCG
GCAAGACCGAGCTGGCCAAGGCGCTAGCGGACTTCCTCTTCGACGACGAGCGGGCGATGGTCCGCATCGACATGTCGGAG
TACAGCGAGAAGCACAGCGTCGCCCGGCTGGTCGGCGCGCCCCCCGGCTACGTCGGCTACGAGGAGGGCGGCCAGCTCAC
CGAGGCGGTGCGGCGCCGGCCGTACAGCGTGGTGCTGCTCGACGAGGTGGAGAAGGCGCACCCGGAGGTCTTCGACATCC
TGCTCCAGGTGCTCGACGACGGCCGTCTCACCGACGGCCAGGGCCGCACGGTGGACTTCCGCAACACCATCCTGGTGCTG
ACGTCCAACCTGGGCAGCCAGTACCTGGTCGACCCGCTCAGCTCCGAGGAGGAGAAGCGGGAGCAGGTGCTGGAGGTGGT
CCGGGCGTCGTTCAAGCCGGAGTTCCTCAACCGCCTGGACGACCTGGTCGTCTTCTCCGCGCTCACCAGGGCCGAGCTGG
AGCGGATCGCAGCGCTCCAGATCAACGCGCTCGGCCGGCGGCTCGCCGAGCGGCGACTCACCCTGGACATCACGCCCGAG
GCGCTCCAGTGGCTGGCCGAGGAGGGCCTGGACCCGGCGTACGGCGCGCGGCCGCTGCGCCGGCTGGTGCAGACCTCGAT
CGGCGACCGGCTCGCCAAGGAGATCCTGTCCGGCGAGATCAAGGACGGCGACACGGTCCGGGTGGACCGTGCCGGCGACG
GGCTGATCGTCGGCCCCGCCACGGGCAAGACGCTCTGA

Domains

Predicted by InterProScan.

• Clp amino terminal domain, pathogenicity island component (Clp_N) (19-68)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (95-146)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (768-848)

• AAA domain (Cdc48 subfamily) (AAA_2) (600-761)

• ATPase family associated with various cellular activities (AAA) (AAA) (204-338)

• AAA lid domain (AAA_lid_9) (344-446)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	45.434	100	0.466
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	42.536	97.572	0.415
clpC	Lactococcus lactis subsp. cremoris KW2	45.686	81.734	0.373
clpE	Streptococcus mutans UA159	46.291	77.919	0.361