Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   SJH97_RS17460 Genome accession   NZ_CP139175
Coordinates   3781921..3782595 (+) Length   224 a.a.
NCBI ID   WP_320585929.1    Uniprot ID   -
Organism   Streptomyces sp. CL7     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3776921..3787595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SJH97_RS17445 (SJH97_17445) - 3777085..3778032 (+) 948 WP_167741286.1 RNA polymerase sigma-70 factor -
  SJH97_RS17450 (SJH97_17450) - 3778134..3779345 (+) 1212 WP_320585927.1 NAD(P)/FAD-dependent oxidoreductase -
  SJH97_RS17455 (SJH97_17455) - 3779528..3781924 (+) 2397 WP_320585928.1 histidine kinase -
  SJH97_RS17460 (SJH97_17460) vraR 3781921..3782595 (+) 675 WP_320585929.1 response regulator transcription factor Regulator
  SJH97_RS17465 (SJH97_17465) - 3782676..3782987 (+) 312 WP_380809813.1 SCO4225 family membrane protein -
  SJH97_RS17470 (SJH97_17470) - 3783151..3785232 (-) 2082 WP_320585931.1 SpoIIE family protein phosphatase -
  SJH97_RS17475 (SJH97_17475) - 3785448..3786056 (+) 609 WP_320585932.1 hypothetical protein -
  SJH97_RS17480 (SJH97_17480) - 3786132..3786683 (+) 552 WP_320585933.1 SigE family RNA polymerase sigma factor -
  SJH97_RS17485 (SJH97_17485) - 3786680..3787405 (+) 726 WP_320585934.1 hypothetical protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 23105.67 Da        Isoelectric Point: 5.0641

>NTDB_id=829539 SJH97_RS17460 WP_320585929.1 3781921..3782595(+) (vraR) [Streptomyces sp. CL7]
MSLKVLVADDQGIVRAGFAAVIDAEEDMTVVGEAADGAAAVRLAERLAPDVVVMDVRMPELDGIAATRIITGRAGAPRVL
VLTTFDLDAYVFDALRAGASGFLLKDAYASELLRGIRVVAAGESVLAPSATRRLISRYAAAGDGPAAPVPELSGLTGRER
GVLTLVAAGLTNAEIADQLGITVGTVKSHVNALLRKLGLRDRVQATILAYDLGLARPNPPGSAV

Nucleotide


Download         Length: 675 bp        

>NTDB_id=829539 SJH97_RS17460 WP_320585929.1 3781921..3782595(+) (vraR) [Streptomyces sp. CL7]
ATGAGCCTCAAGGTGCTGGTCGCCGACGACCAGGGCATCGTGCGCGCGGGATTCGCCGCCGTCATCGACGCCGAGGAGGA
CATGACGGTCGTCGGCGAGGCCGCCGACGGGGCCGCCGCGGTGCGGCTCGCCGAGCGGCTGGCGCCGGACGTCGTCGTCA
TGGACGTCCGGATGCCCGAGCTGGACGGCATCGCCGCGACCCGGATCATCACCGGCCGCGCCGGCGCGCCCCGGGTGCTG
GTGCTGACCACCTTCGACCTCGACGCCTACGTCTTCGACGCGCTGCGGGCGGGCGCCTCCGGCTTCCTGCTCAAGGACGC
GTACGCCTCCGAACTGCTGCGCGGGATCCGGGTGGTGGCGGCGGGGGAGAGCGTGCTCGCCCCGTCCGCGACCCGCCGGC
TCATCTCCCGCTACGCGGCGGCGGGCGACGGGCCCGCGGCGCCGGTCCCCGAGCTGTCCGGCCTGACCGGCCGGGAACGC
GGCGTCCTCACGCTGGTCGCCGCCGGACTGACCAACGCGGAGATCGCCGACCAGCTCGGCATCACCGTCGGCACCGTGAA
GTCCCACGTCAACGCGTTGCTGCGGAAGCTGGGGCTGCGGGACCGGGTGCAGGCGACGATCCTCGCCTACGACCTCGGCC
TCGCCCGCCCCAACCCGCCCGGCAGCGCCGTGTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-114)

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.5

96.429

0.362