Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   SJH97_RS10305 Genome accession   NZ_CP139175
Coordinates   2229648..2231576 (+) Length   642 a.a.
NCBI ID   WP_320584972.1    Uniprot ID   -
Organism   Streptomyces sp. CL7     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2224648..2236576
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SJH97_RS10270 (SJH97_10270) - 2225167..2225328 (-) 162 WP_320584969.1 hypothetical protein -
  SJH97_RS10290 (SJH97_10290) - 2226005..2226310 (+) 306 WP_093764752.1 hypothetical protein -
  SJH97_RS10295 (SJH97_10295) - 2226349..2227800 (+) 1452 WP_320584970.1 xylulokinase -
  SJH97_RS10300 (SJH97_10300) rcrP 2227915..2229648 (+) 1734 WP_320584971.1 ABC transporter ATP-binding protein Regulator
  SJH97_RS10305 (SJH97_10305) rcrQ 2229648..2231576 (+) 1929 WP_320584972.1 ABC transporter ATP-binding protein Regulator
  SJH97_RS10310 (SJH97_10310) - 2231630..2232937 (-) 1308 WP_320584973.1 RNA polymerase sigma factor -
  SJH97_RS10315 (SJH97_10315) dnaG 2233078..2234997 (-) 1920 WP_320584974.1 DNA primase -
  SJH97_RS10320 (SJH97_10320) - 2235146..2236411 (-) 1266 WP_320584975.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69645.93 Da        Isoelectric Point: 6.0993

>NTDB_id=829527 SJH97_RS10305 WP_320584972.1 2229648..2231576(+) (rcrQ) [Streptomyces sp. CL7]
MAGPGGRMTAGVAPGQRSIDFKGSGKRLLGRFGPERLTMYGLLACVVVSVGLSVAGPKILGRATDLVFAGIVGRDMPEGA
TKEQVLESMRERGDGQVADMLRSTDFTPGQGIDFTAVGHVLLLALAVFGAAGLLMAVATRLVNRAVNRTMFRMREDVQTK
LSRLPLSYFDKRQRGEVLSRATNDIDNIGQTLQQSMGQLINSLLTIIGVLAMMFYVSWILALVALVTVPLSFVVATRVGK
RSQPHFVQQWRSTGTLNAHVEEMYTGHALVKVFGRQQESARKFAEENEALYEAGFRAQFNSGVMQPLMMFVSNLNYVLVA
VVGGLRVASGTLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERVFEVLDAEEQKADPSPAERPAELRGRVELE
HVSFRYDPDKPLIEDLSLTVEPGRTVAIVGPTGAGKTTLVNLLMRFYEVSGGRITLDGVDIARMTRDELRAGIGMVLQDT
WLFGGTIAENIAYGATREVTREEIEEAARAAHADRFVRTLPDGYDTVIDDEGSGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADTILVMENGAIVEQGAHDKLLAADGAYARLYKAQFTQAVAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=829527 SJH97_RS10305 WP_320584972.1 2229648..2231576(+) (rcrQ) [Streptomyces sp. CL7]
ATGGCGGGGCCAGGGGGCCGGATGACGGCGGGGGTCGCTCCCGGCCAGCGGTCGATCGACTTCAAGGGGTCCGGCAAGCG
GCTGCTCGGCCGCTTCGGACCGGAGCGCCTCACCATGTACGGGCTGCTGGCCTGTGTCGTGGTGAGCGTGGGGCTCAGCG
TGGCCGGGCCGAAGATCCTGGGCCGGGCCACCGACCTGGTGTTCGCGGGCATCGTGGGCCGTGACATGCCGGAGGGCGCC
ACCAAGGAGCAGGTGCTGGAGTCGATGCGGGAGCGCGGCGACGGCCAGGTCGCCGACATGCTCCGCTCCACGGACTTCAC
ACCGGGTCAGGGCATCGACTTCACCGCGGTGGGGCATGTCCTGCTGCTCGCGCTGGCGGTGTTCGGAGCGGCCGGGCTGC
TGATGGCGGTGGCGACCCGGCTGGTGAACCGGGCGGTGAACCGCACGATGTTCCGGATGCGCGAGGACGTGCAGACGAAG
CTGTCGCGGCTGCCGCTGTCGTACTTCGACAAGCGGCAGCGCGGTGAGGTGCTGAGCCGGGCCACCAACGACATCGACAA
CATCGGGCAGACGCTCCAGCAGTCGATGGGGCAGCTGATCAACTCGCTGCTCACCATCATCGGCGTGCTGGCGATGATGT
TCTACGTCTCCTGGATCCTGGCGCTGGTCGCGCTGGTGACGGTGCCGCTGTCGTTCGTCGTCGCCACCCGGGTCGGCAAG
CGGTCGCAGCCGCACTTCGTGCAGCAGTGGCGCTCCACCGGCACGCTCAACGCGCACGTCGAGGAGATGTACACCGGGCA
CGCCCTGGTGAAGGTGTTCGGGCGGCAGCAGGAGTCGGCGCGGAAGTTCGCCGAGGAGAACGAGGCGCTGTACGAGGCCG
GGTTCAGGGCGCAGTTCAACAGCGGTGTCATGCAGCCGCTGATGATGTTCGTCTCGAACCTCAACTATGTGCTGGTCGCG
GTCGTCGGCGGTCTGCGGGTGGCCTCGGGGACGCTGTCCATCGGGGACGTGCAGGCGTTCATCCAGTACTCGCGGCAGTT
CTCGATGCCGCTGACGCAGGTCGCGTCGATGGCGAACCTGGTGCAGTCGGGCGTGGCCTCCGCCGAGCGGGTCTTCGAGG
TGCTCGACGCCGAGGAGCAGAAGGCCGACCCGTCGCCCGCCGAGCGTCCCGCGGAGCTGCGCGGCCGGGTGGAACTGGAG
CATGTGTCGTTCCGCTACGACCCGGACAAGCCGCTGATCGAGGACCTGTCGCTGACGGTGGAGCCGGGCCGCACGGTCGC
CATCGTCGGCCCCACGGGCGCGGGCAAGACCACCCTGGTCAACCTGCTGATGCGGTTCTACGAGGTGTCCGGCGGGCGGA
TCACCCTGGACGGGGTGGACATCGCGCGGATGACGCGGGACGAACTGCGCGCCGGGATCGGCATGGTGCTCCAGGACACC
TGGCTGTTCGGCGGCACCATCGCGGAGAACATCGCGTACGGCGCGACCCGTGAGGTGACCCGGGAGGAGATCGAGGAGGC
GGCCCGGGCGGCGCACGCCGACCGGTTCGTCCGCACCCTGCCCGACGGGTACGACACCGTCATCGACGACGAGGGCAGCG
GGGTGAGCGCGGGCGAGAAGCAGCTGATCACCATCGCGCGGGCGTTCCTGTCGGACCCGGTGATCCTGGTGCTGGACGAG
GCGACGAGCTCCGTGGACACCCGTACGGAGGTGCTGATCCAGAAGGCGATGGCCCGGCTGGCGCACGGCCGTACGTCGTT
CGTCATCGCGCACCGGCTCTCCACGATCCGCGACGCGGACACCATCCTCGTCATGGAGAACGGGGCGATCGTCGAACAGG
GCGCGCACGACAAGCTGCTGGCGGCGGACGGGGCCTACGCCCGGCTGTACAAGGCGCAGTTCACGCAGGCGGTCGCCGAG
GTGGACTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(414-563)

ABC transporter transmembrane region (ABC_membrane)

(43-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.939

96.262

0.394