Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   SJH97_RS10300 Genome accession   NZ_CP139175
Coordinates   2227915..2229648 (+) Length   577 a.a.
NCBI ID   WP_320584971.1    Uniprot ID   -
Organism   Streptomyces sp. CL7     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2222915..2234648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SJH97_RS10255 (SJH97_10255) - 2223748..2223963 (+) 216 WP_320584966.1 type II toxin-antitoxin system VapB family antitoxin -
  SJH97_RS10260 (SJH97_10260) - 2223960..2224373 (+) 414 WP_320584967.1 PIN domain nuclease -
  SJH97_RS10265 (SJH97_10265) - 2224570..2225001 (-) 432 WP_320584968.1 ester cyclase -
  SJH97_RS10270 (SJH97_10270) - 2225167..2225328 (-) 162 WP_320584969.1 hypothetical protein -
  SJH97_RS10290 (SJH97_10290) - 2226005..2226310 (+) 306 WP_093764752.1 hypothetical protein -
  SJH97_RS10295 (SJH97_10295) - 2226349..2227800 (+) 1452 WP_320584970.1 xylulokinase -
  SJH97_RS10300 (SJH97_10300) rcrP 2227915..2229648 (+) 1734 WP_320584971.1 ABC transporter ATP-binding protein Regulator
  SJH97_RS10305 (SJH97_10305) rcrQ 2229648..2231576 (+) 1929 WP_320584972.1 ABC transporter ATP-binding protein Regulator
  SJH97_RS10310 (SJH97_10310) - 2231630..2232937 (-) 1308 WP_320584973.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62493.48 Da        Isoelectric Point: 6.1274

>NTDB_id=829526 SJH97_RS10300 WP_320584971.1 2227915..2229648(+) (rcrP) [Streptomyces sp. CL7]
MLIRLLRDRLRPYTRPLVLLVALQFLQTCATLYLPTLNADIIDNGVVQGDTGYILGYGGLMIGISLAQVVCNVGAVYYGA
RTAAALGRDLRAAVFDRVQSFSAREVGHFGAPSLITRTTNDVQQIQMLTLMAFTLMVSAPIMCVGGVVLALGLDVPLSGV
LVAVVPVLGVCVTLIVRRLRPLFRTMQKRLDTVNRVLREQITGNRVIRAFVRDTYEQRRFHGSNSELTDVSLRTGNLLAL
MFPVVMTVVNLSSIAVVWFGAHRIDSGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERVQEVLDTSSSVVP
PAAPVTELRRHGHLEVRGAGFRYPGAEEPVLRAVDLVARPGEVTAVIGSTGSGKSTLLGLVPRLFDATEGEVLVDGVPVA
DVDPALLARTVGLVPQKPYLFAGTVATNLRYGNPDATDEELWHALEVAQGKDFVERLEGGLDAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALARETAEATVVIVAQRVATIRDADRIVVLDEGRVVGTGRHHELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=829526 SJH97_RS10300 WP_320584971.1 2227915..2229648(+) (rcrP) [Streptomyces sp. CL7]
GTGCTCATACGACTTCTACGTGACCGCCTACGCCCCTACACAAGACCCCTCGTCCTTCTGGTGGCCCTGCAGTTCCTGCA
GACCTGCGCCACGCTCTACCTGCCCACGCTGAACGCGGACATCATCGACAACGGTGTCGTCCAAGGTGACACGGGTTACA
TCCTGGGCTACGGCGGCCTGATGATCGGCATCTCGCTGGCGCAGGTCGTCTGCAACGTCGGCGCCGTGTACTACGGGGCC
CGGACGGCGGCGGCCCTGGGGCGGGACCTGCGCGCCGCGGTCTTCGACCGGGTGCAGTCCTTCTCCGCCCGTGAGGTGGG
TCACTTCGGGGCGCCGTCGCTGATCACGCGGACGACGAACGACGTCCAGCAGATCCAGATGCTCACCCTCATGGCGTTCA
CCCTGATGGTGTCGGCGCCGATCATGTGCGTGGGCGGTGTGGTACTGGCGCTCGGCCTTGACGTGCCGCTGTCCGGGGTG
CTGGTCGCGGTGGTGCCGGTGCTGGGCGTCTGCGTGACGCTGATCGTGCGCCGGCTGCGGCCGTTGTTCCGCACCATGCA
GAAGCGGCTGGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTCATCCGGGCGTTCGTGCGGGACA
CGTACGAGCAGCGGCGGTTCCACGGGTCCAACAGCGAGCTGACCGATGTGTCGCTGCGCACCGGCAATCTGCTCGCGCTG
ATGTTCCCGGTGGTCATGACGGTGGTGAACCTGTCGTCGATCGCGGTGGTGTGGTTCGGCGCGCACCGCATCGACAGCGG
CGGGATGCAGATCGGCGACCTGACGGCGTTCCTCGCCTATCTGATGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTGTGCGCCGAGCGCGTCCAGGAGGTGCTGGACACCTCCTCCAGCGTGGTGCCG
CCCGCCGCGCCGGTCACCGAGCTGCGCCGGCACGGTCATCTGGAGGTCCGGGGCGCGGGCTTCCGCTACCCGGGCGCCGA
GGAGCCGGTGCTGCGGGCGGTCGATCTGGTGGCGCGGCCCGGCGAGGTCACCGCCGTGATCGGCTCCACCGGCAGCGGCA
AGTCCACGCTGCTGGGGCTGGTGCCGCGGCTGTTCGACGCGACCGAGGGCGAGGTGCTGGTCGACGGGGTGCCGGTGGCG
GACGTCGATCCGGCGCTGCTCGCGCGGACCGTCGGCCTGGTGCCGCAGAAGCCGTATCTGTTCGCGGGCACGGTGGCGAC
CAATCTGCGCTACGGCAATCCGGACGCCACGGACGAGGAACTGTGGCACGCCCTGGAGGTGGCGCAGGGCAAGGACTTCG
TGGAGCGGCTGGAGGGCGGTCTCGACGCGCCGATCGCGCAGGGCGGGACGAACGTCTCCGGCGGTCAGCGCCAGCGCCTG
GCCATCGCCCGGACGCTGGTGCAGCGCCCGGAGATCTACCTCTTCGACGACTCCTTCTCCGCGCTCGACTACGCCACCGA
CGCGGCCCTGCGCGCGGCGCTCGCGCGGGAGACGGCCGAGGCGACGGTGGTGATCGTCGCCCAGCGGGTGGCGACCATCC
GGGACGCCGACCGGATCGTGGTGCTGGACGAGGGCCGGGTCGTCGGCACCGGACGGCACCACGAGCTGATGGCGGACAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCGGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(352-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.609

97.574

0.386