Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   SKB18_RS03345 Genome accession   NZ_CP139163
Coordinates   685539..686315 (-) Length   258 a.a.
NCBI ID   WP_012774987.1    Uniprot ID   A0A0H3N2A2
Organism   Streptococcus suis strain cnzyss2-311     
Function   repressor of recA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 680539..691315
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SKB18_RS03320 - 680895..682667 (-) 1773 WP_011922008.1 beta-galactosidase family protein -
  SKB18_RS03325 - 682874..683584 (+) 711 WP_004194099.1 GntR family transcriptional regulator -
  SKB18_RS03330 - 683724..684455 (-) 732 WP_012774988.1 GntR family transcriptional regulator -
  SKB18_RS03335 - 684555..684872 (-) 318 WP_004194104.1 DUF960 domain-containing protein -
  SKB18_RS03340 - 684930..685463 (-) 534 WP_004194106.1 DUF402 domain-containing protein -
  SKB18_RS03345 recX 685539..686315 (-) 777 WP_012774987.1 recombination regulator RecX Regulator
  SKB18_RS03350 rlmD 686353..687705 (+) 1353 WP_011922004.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD -
  SKB18_RS03355 - 687990..688193 (+) 204 Protein_666 transposase -

Sequence

Protein


Download         Length: 258 a.a.        Molecular weight: 30372.90 Da        Isoelectric Point: 9.3979

>NTDB_id=829439 SKB18_RS03345 WP_012774987.1 685539..686315(-) (recX) [Streptococcus suis strain cnzyss2-311]
MRITKIEKKKRLYLLEVDGQDSLYITEDTIVRFMLSKGKEITEQEFRELRDFAQFSYGKNLALYYLSFKQRTKKEVSNYL
KKYEIEENNIVKIVTVLEEEKWLDDGNYVDSYVRQNALNGDKGPAMIRQKLMQKGIPKTLIDKRLAEEDFSELAGKIGEK
LVGRYQRKLPLRALQDKVVQGLMGKGFSYEAAKQSLGQLELVADEENEDDLIAKELDKQYRKYSRKYEGYELKQRLIQAL
ARKGYDFDRIQAVLRDYL

Nucleotide


Download         Length: 777 bp        

>NTDB_id=829439 SKB18_RS03345 WP_012774987.1 685539..686315(-) (recX) [Streptococcus suis strain cnzyss2-311]
ATGAGAATTACAAAAATTGAAAAGAAGAAACGTCTTTATTTACTTGAAGTGGATGGTCAGGATAGTTTATATATTACGGA
AGACACAATTGTTCGCTTCATGCTTAGTAAGGGAAAGGAAATCACGGAGCAGGAGTTTCGTGAGCTTCGCGATTTTGCTC
AGTTTTCTTATGGGAAAAATCTAGCACTTTATTACCTTTCCTTCAAGCAACGTACCAAAAAAGAAGTTAGTAATTATCTA
AAAAAATATGAAATTGAAGAAAACAATATTGTCAAGATTGTGACGGTATTAGAAGAGGAAAAATGGCTGGACGATGGGAA
TTATGTTGATAGCTATGTTCGTCAGAATGCTCTAAATGGAGATAAGGGACCAGCTATGATTCGTCAGAAGTTGATGCAGA
AAGGAATTCCTAAAACGCTGATTGATAAAAGACTGGCTGAGGAAGATTTTTCAGAGCTTGCTGGGAAGATTGGGGAGAAA
TTGGTGGGTAGATACCAAAGAAAATTGCCTCTTCGAGCTTTGCAAGATAAAGTTGTACAGGGATTGATGGGTAAGGGTTT
TTCTTATGAGGCGGCCAAACAAAGCCTGGGTCAGTTGGAACTTGTGGCTGATGAGGAAAATGAAGATGATTTAATCGCCA
AGGAATTGGATAAGCAGTATAGAAAATATAGTCGTAAATATGAAGGCTATGAATTGAAGCAAAGGTTGATACAGGCTTTG
GCTCGAAAGGGTTATGACTTTGATCGGATTCAGGCTGTCCTTCGTGATTATCTGTGA

Domains

Predicted by InterProScan.

RecX family (RecX_HTH2)

(80-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3N2A2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Staphylococcus aureus strain ATCC 12600

35.206

100

0.364