Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   QLQ48_RS04480 Genome accession   NZ_CP124923
Coordinates   884006..885679 (+) Length   557 a.a.
NCBI ID   WP_282897488.1    Uniprot ID   -
Organism   Enterococcus faecalis strain EfsC11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 879006..890679
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLQ48_RS04450 (QLQ48_04450) - 879679..879909 (+) 231 WP_002355878.1 exodeoxyribonuclease VII small subunit -
  QLQ48_RS04455 (QLQ48_04455) - 879909..880790 (+) 882 WP_002355879.1 polyprenyl synthetase family protein -
  QLQ48_RS04460 (QLQ48_04460) - 880804..881619 (+) 816 WP_002378128.1 TlyA family RNA methyltransferase -
  QLQ48_RS04465 (QLQ48_04465) - 881985..882542 (+) 558 WP_002361405.1 matrixin family metalloprotease -
  QLQ48_RS04470 (QLQ48_04470) - 882547..883407 (+) 861 WP_010784577.1 hypothetical protein -
  QLQ48_RS04475 (QLQ48_04475) - 883539..883988 (+) 450 WP_002358881.1 ArgR family transcriptional regulator -
  QLQ48_RS04480 (QLQ48_04480) recN 884006..885679 (+) 1674 WP_282897488.1 DNA repair protein RecN Machinery gene
  QLQ48_RS04485 (QLQ48_04485) - 885771..885881 (-) 111 WP_002383399.1 DUF4044 domain-containing protein -
  QLQ48_RS04490 (QLQ48_04490) - 885949..886914 (-) 966 WP_002383400.1 magnesium transporter CorA family protein -
  QLQ48_RS04495 (QLQ48_04495) - 887159..887551 (+) 393 WP_002383401.1 DUF3397 domain-containing protein -
  QLQ48_RS04500 (QLQ48_04500) mraZ 887785..888270 (+) 486 WP_002403788.1 division/cell wall cluster transcriptional repressor MraZ -
  QLQ48_RS04505 (QLQ48_04505) rsmH 888285..889241 (+) 957 WP_002355891.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  QLQ48_RS04510 (QLQ48_04510) ftsL 889258..889665 (+) 408 WP_002358883.1 cell division protein FtsL -

Sequence

Protein


Download         Length: 557 a.a.        Molecular weight: 62615.00 Da        Isoelectric Point: 4.5772

>NTDB_id=829417 QLQ48_RS04480 WP_282897488.1 884006..885679(+) (recN) [Enterococcus faecalis strain EfsC11]
MLQEPSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRGSSDYIRQGANKCTLEGLFSMPKSQELKKLL
EELGIETEEDSLVIQRDISASGKNVCRVNGRIVNITNLKRIGEYLVDIHGQNEHQELMQSERHIDMLDEFGGKKLLAVKE
KYTQAYQEYRALEAKVRKRQKNEKEFAQRMDMLHFQSDEIASAQLVAGEEEQLLEERNKLNNFQKIADALTISYAALNGE
DDSSLDKIGTSMNELASIESLDSEYKTLSDTVQNAYYLLQEASGDLSRLIDGLELDEGRLNEVENRLELIRQMKRKYGDS
IETILSYYEEITKELAEADFLEGGTGDLEALLAEKQQAAHQQALALRKERKRLAKELEQQILTELKELYLERTEFEVRFT
ELEHLQENGLDGVEFYITTNPGEPLKPLVRVASGGELSRVMLAMKTIFSQTQGITSIVFDEVDTGVSGRVAQAIADKIYQ
ISENSQVLCITHLPQVAAVADEHYFIEKEIVAGRTETSVRILSEKERVNEIARMLAGSEITKLTIEHAQELLAMAKK

Nucleotide


Download         Length: 1674 bp        

>NTDB_id=829417 QLQ48_RS04480 WP_282897488.1 884006..885679(+) (recN) [Enterococcus faecalis strain EfsC11]
ATGTTACAAGAACCTTCCGTGAAAAATTTTGCGATTATCTCTTCGTTACAATTAGAGTTTCAAATGGGTATGACCGTTTT
AACGGGAGAAACGGGTGCGGGGAAATCCATCATTATTGATGCAATGGGATTACTCACAGGCGGACGCGGCTCCAGTGACT
ATATTCGTCAAGGAGCAAATAAATGCACCTTAGAAGGACTTTTTTCAATGCCGAAAAGTCAAGAATTAAAGAAATTATTA
GAAGAATTAGGTATTGAAACAGAAGAAGATTCTTTAGTGATTCAACGAGATATTTCCGCTTCTGGTAAAAATGTTTGCCG
TGTCAACGGACGGATTGTCAACATTACTAATTTAAAAAGAATTGGGGAATATTTAGTAGATATTCATGGCCAAAACGAAC
ATCAAGAATTGATGCAAAGTGAACGCCATATTGATATGTTAGATGAATTTGGTGGGAAAAAACTTTTAGCAGTCAAAGAA
AAATATACACAGGCGTATCAAGAGTATCGCGCACTCGAAGCCAAAGTCAGAAAGCGACAAAAAAATGAAAAAGAATTTGC
CCAAAGAATGGACATGCTTCATTTTCAAAGTGATGAAATTGCTAGTGCACAGTTAGTCGCTGGCGAAGAAGAACAATTGT
TAGAAGAACGCAATAAACTGAACAATTTTCAAAAGATTGCTGATGCACTGACGATTAGTTATGCCGCGCTAAATGGTGAA
GACGATAGTAGTTTGGATAAAATCGGAACAAGTATGAATGAACTCGCTTCGATTGAATCCCTTGATTCAGAATATAAAAC
ATTGTCAGATACTGTTCAAAATGCTTACTACTTACTACAAGAAGCCAGTGGAGATCTTTCTAGGTTGATTGATGGCTTAG
AACTAGACGAAGGCCGCTTGAATGAAGTAGAAAATCGTTTGGAATTAATCCGTCAAATGAAACGTAAATATGGCGATTCA
ATCGAAACGATTTTATCTTACTATGAAGAAATCACCAAAGAGTTAGCAGAGGCTGATTTTTTGGAAGGCGGTACAGGTGA
CTTAGAAGCGTTGCTTGCAGAGAAACAACAAGCGGCTCATCAACAAGCGTTAGCTTTACGAAAAGAACGAAAGCGCCTAG
CCAAAGAGCTCGAACAACAAATTTTAACCGAATTAAAAGAACTATATTTGGAGCGAACTGAATTTGAAGTCCGCTTTACA
GAACTTGAGCATTTACAAGAAAATGGCTTAGACGGAGTAGAATTTTATATTACTACTAACCCAGGGGAACCATTAAAACC
GTTAGTTCGGGTGGCTTCTGGCGGAGAACTTTCGCGAGTGATGTTGGCTATGAAAACAATCTTTTCTCAAACGCAAGGGA
TCACTAGTATTGTTTTTGATGAAGTGGATACAGGAGTTAGTGGCCGAGTAGCACAGGCGATTGCCGATAAAATTTATCAA
ATTTCAGAAAATTCGCAGGTGTTGTGTATCACGCACTTGCCACAAGTGGCGGCCGTTGCCGATGAACATTATTTTATTGA
AAAAGAAATCGTGGCGGGGCGGACAGAAACAAGCGTCCGAATTTTATCTGAAAAAGAGCGAGTAAACGAAATTGCGCGTA
TGCTCGCAGGAAGTGAAATTACGAAATTAACCATTGAACATGCACAAGAGCTGTTGGCGATGGCGAAAAAATAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(7-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

48.517

100

0.499