Detailed information    

insolico Bioinformatically predicted

Overview


Name   rcrP   Type   Regulator
Locus tag   R8611_RS06800 Genome accession   NZ_AP026927
Coordinates   1340082..1340804 (-) Length   240 a.a.
NCBI ID   WP_025172244.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700178     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context


Location: 1335082..1345804
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8611_RS06790 (PC0174_13490) - 1337656..1338822 (-) 1167 WP_000521369.1 MalY/PatB family protein -
  R8611_RS06795 (PC0174_13500) - 1338830..1339924 (-) 1095 WP_050255986.1 cystathionine gamma-synthase -
  R8611_RS06800 rcrP 1340082..1340804 (-) 723 WP_025172244.1 ABC transporter ATP-binding protein Regulator
  R8611_RS06805 - 1340991..1341512 (-) 522 Protein_1351 ABC transporter transmembrane domain-containing protein -
  R8611_RS06810 (PC0174_13520) - 1341530..1341763 (-) 234 WP_000768999.1 hypothetical protein -
  R8611_RS06815 (PC0174_13530) amiA 1341935..1343893 (-) 1959 WP_050199746.1 peptide ABC transporter substrate-binding protein Regulator
  R8611_RS06820 (PC0174_13540) - 1344097..1345719 (-) 1623 WP_000017797.1 polysaccharide biosynthesis protein -

Sequence


Protein


Download         Length: 240 a.a.        Molecular weight: 27315.19 Da        Isoelectric Point: 5.2119

>NTDB_id=82939 R8611_RS06800 WP_025172244.1 1340082..1340804(-) (rcrP) [Streptococcus pneumoniae strain PZ900700178]
MNFNHVYFGYDENRPVLKDITCSIFKGQKIAFVGPSGSGKSTIVRLLERFYKPLSGDILMEQSSIYDFNLKEWRSKIAWV
SQNNAVLSGSIRDNLCLGLNRLVTDDELMKVLDLVSLGDEIRSMKEGLDTEVGERGRFLSGGQSQRLQIARTYLKDAEIL
IFDESTANLDADSEYAIISILYSALKEKTVVIIAHRLSTVKDVDCIFFLEERKITGSGTHKELLENHERYARFVQEQMIE

Nucleotide


Download         Length: 723 bp        

>NTDB_id=82939 R8611_RS06800 WP_025172244.1 1340082..1340804(-) (rcrP) [Streptococcus pneumoniae strain PZ900700178]
TTGAATTTTAACCATGTCTATTTTGGTTATGATGAAAATCGACCTGTCTTAAAGGATATTACTTGTTCAATTTTCAAGGG
GCAAAAAATTGCTTTTGTTGGACCATCTGGATCAGGAAAATCAACGATTGTGCGTTTGTTAGAGCGGTTTTATAAACCGC
TTTCAGGAGATATTCTAATGGAGCAATCAAGTATATATGATTTTAACTTAAAAGAATGGAGAAGTAAAATCGCTTGGGTT
TCACAAAATAATGCAGTCTTATCTGGCAGTATTCGTGACAATCTTTGTCTCGGTTTGAATCGCTTAGTAACTGATGATGA
ATTGATGAAAGTGCTAGACTTAGTATCACTAGGTGATGAGATTCGCTCCATGAAAGAGGGACTAGATACTGAAGTTGGTG
AACGCGGACGATTCTTGTCAGGGGGGCAAAGCCAAAGACTTCAAATAGCTAGAACCTACTTAAAAGATGCTGAAATTCTT
ATATTTGATGAATCCACTGCTAATCTTGATGCGGATTCTGAGTATGCGATTATCAGTATCCTCTATTCTGCATTAAAGGA
GAAGACGGTTGTGATTATAGCGCATCGTTTGTCAACGGTAAAAGATGTGGATTGTATTTTCTTCTTAGAGGAGAGGAAAA
TCACTGGCTCAGGAACTCATAAGGAACTACTGGAAAATCATGAGCGTTATGCTCGTTTTGTGCAGGAGCAAATGATAGAG
TGA

Domains


Predicted by InterProScan.

(17-167)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

36.82

99.583

0.367


Multiple sequence alignment