Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   SIY76_RS14450 Genome accession   NZ_CP139130
Coordinates   2934118..2934747 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain YZ22PE165     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2929118..2939747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIY76_RS14435 helD 2929360..2931414 (-) 2055 WP_001295354.1 DNA helicase IV -
  SIY76_RS14440 yccF 2931537..2931983 (+) 447 WP_001261235.1 YccF domain-containing protein -
  SIY76_RS14445 yccS 2931993..2934155 (+) 2163 WP_000875061.1 YccS family putative transporter -
  SIY76_RS14450 sxy/tfoX 2934118..2934747 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  SIY76_RS14455 sulA 2934966..2935475 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  SIY76_RS14460 ompA 2935832..2936872 (+) 1041 WP_000750416.1 porin OmpA -
  SIY76_RS14465 matP 2936948..2937400 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  SIY76_RS14470 ycbZ 2937586..2939346 (+) 1761 WP_000156518.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=829378 SIY76_RS14450 WP_000839153.1 2934118..2934747(-) (sxy/tfoX) [Escherichia coli strain YZ22PE165]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=829378 SIY76_RS14450 WP_000839153.1 2934118..2934747(-) (sxy/tfoX) [Escherichia coli strain YZ22PE165]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1