Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   H7679_RS01435 Genome accession   NZ_AP023392
Coordinates   257771..258484 (+) Length   237 a.a.
NCBI ID   WP_012774930.1    Uniprot ID   A0A142UPI2
Organism   Streptococcus suis strain DAT300     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 255428..264102 257771..258484 within 0


Gene organization within MGE regions


Location: 255428..264102
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7679_RS01425 (DAT300_02500) - 255428..255826 (+) 399 WP_024395184.1 hypothetical protein -
  H7679_RS01430 (DAT300_02520) treP 256062..257537 (-) 1476 Protein_251 PTS system trehalose-specific EIIBC component -
  H7679_RS01435 (DAT300_02530) treR 257771..258484 (+) 714 WP_012774930.1 trehalose operon repressor Regulator
  H7679_RS01440 (DAT300_02540) - 258542..258853 (+) 312 WP_002935948.1 hypothetical protein -
  H7679_RS01445 (DAT300_02550) - 258850..259398 (+) 549 WP_002935945.1 CvpA family protein -
  H7679_RS01450 (DAT300_02560) - 259948..262281 (+) 2334 WP_029752765.1 endonuclease MutS2 -
  H7679_RS01455 (DAT300_02570) - 262447..262827 (+) 381 WP_024389717.1 DUF1310 family protein -
  H7679_RS11330 (DAT300_02590) - 262834..263624 (+) 791 Protein_257 esterase/lipase family protein -
  H7679_RS01465 (DAT300_02600) - 263710..264102 (+) 393 WP_014637383.1 DUF1310 family protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27200.07 Da        Isoelectric Point: 6.7422

>NTDB_id=82937 H7679_RS01435 WP_012774930.1 257771..258484(+) (treR) [Streptococcus suis strain DAT300]
MKKYQEIYNDLKEKIRTNVYPAESSLPTEQQLQEIYGVSRDTVRKALAILTEGGLIQKVQGRGSMVLKQEILNFPVSGLT
SYQELTNVLQLSTKTDVVSLDMITVNSSLSHLTGFEPYSKVWKVVRTRSIDGKVSVVDTDYLAVDVVPELTTAIAEKSIY
EYLENKLGLDIAYAQKEITVEPTNREERELMQSKDDYLVLIKSRVYLGDTQQFQYTESKHKIDKFRFVDFARRKHSL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=82937 H7679_RS01435 WP_012774930.1 257771..258484(+) (treR) [Streptococcus suis strain DAT300]
ATGAAAAAATACCAAGAAATTTATAATGACTTAAAAGAAAAAATACGGACAAATGTTTATCCGGCAGAAAGCTCCCTACC
GACAGAACAGCAGCTTCAGGAAATCTATGGTGTTAGTCGTGATACGGTTCGTAAGGCGTTGGCGATTTTGACTGAGGGAG
GTTTGATTCAAAAAGTGCAAGGGCGTGGTTCAATGGTCCTTAAGCAAGAAATTCTCAATTTCCCAGTTTCAGGTTTAACT
TCCTATCAGGAATTAACAAATGTTCTCCAGCTTTCTACCAAGACAGATGTTGTCAGCTTAGATATGATTACCGTTAATAG
TAGCCTTTCGCACTTGACAGGCTTTGAGCCGTATAGCAAGGTGTGGAAAGTTGTCCGTACACGTTCAATTGACGGTAAGG
TCTCCGTTGTGGATACAGATTATCTTGCTGTCGATGTCGTGCCAGAGTTGACAACTGCTATTGCTGAAAAATCCATCTAT
GAATACCTAGAAAATAAGTTAGGCCTTGATATTGCTTATGCACAAAAAGAGATTACGGTAGAGCCGACCAATCGAGAAGA
GCGCGAGCTAATGCAATCGAAGGATGATTATTTGGTCTTGATTAAATCTCGTGTCTATCTCGGTGATACCCAGCAATTCC
AATATACAGAAAGCAAGCATAAAATTGATAAATTCCGCTTTGTAGATTTTGCTCGTAGAAAGCATTCTTTATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(91-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A142UPI2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

52.137

98.734

0.515

Multiple sequence alignment