Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   SIY77_RS14945 Genome accession   NZ_CP139125
Coordinates   3047151..3048134 (+) Length   327 a.a.
NCBI ID   WP_001196486.1    Uniprot ID   A7ZT85
Organism   Escherichia coli strain YZ22PE244     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 3042151..3053134
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIY77_RS14930 dppA 3043294..3044901 (+) 1608 WP_001222883.1 dipeptide ABC transporter substrate-binding protein DppA -
  SIY77_RS14935 dppB 3045209..3046228 (+) 1020 WP_000938855.1 dipeptide ABC transporter permease DppB -
  SIY77_RS14940 dppC 3046238..3047140 (+) 903 WP_000084677.1 dipeptide ABC transporter permease DppC -
  SIY77_RS14945 amiE 3047151..3048134 (+) 984 WP_001196486.1 dipeptide ABC transporter ATP-binding protein Regulator
  SIY77_RS14950 dppF 3048131..3049135 (+) 1005 WP_000107012.1 dipeptide ABC transporter ATP-binding subunit DppF -
  SIY77_RS14955 yhjV 3049165..3050436 (-) 1272 WP_001295225.1 aromatic amino acid transport family protein -
  SIY77_RS14960 ldrD 3050912..3051019 (+) 108 WP_000141634.1 type I toxin-antitoxin system toxic polypeptide LdrD -
  SIY77_RS14965 bcsG 3051106..3052784 (-) 1679 Protein_2910 cellulose biosynthesis protein BcsG -
  SIY77_RS14970 bcsF 3052781..3052972 (-) 192 WP_000988308.1 cellulose biosynthesis protein BcsF -

Sequence

Protein


Download         Length: 327 a.a.        Molecular weight: 35844.36 Da        Isoelectric Point: 6.5814

>NTDB_id=829305 SIY77_RS14945 WP_001196486.1 3047151..3048134(+) (amiE) [Escherichia coli strain YZ22PE244]
MALLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISE
KERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKSTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQ
RVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGDAHA
IFHAPRHPYTQALLRALPEFAQDKERLASLPGVVPGKYDRPNGCLLNPRCPYATDRCRAEEPALNMLADGRQSKCHYPLD
DAGRPTL

Nucleotide


Download         Length: 984 bp        

>NTDB_id=829305 SIY77_RS14945 WP_001196486.1 3047151..3048134(+) (amiE) [Escherichia coli strain YZ22PE244]
ATGGCGTTATTAAATGTAGATAAATTATCGGTGCATTTCGGCGACGAAAGCGCGCCGTTCCGCGCCGTAGACCGCATCAG
CTACAGCGTAAAACAGGGCGAAGTGGTCGGGATTGTGGGTGAGTCCGGCTCCGGTAAGTCGGTCAGTTCACTGGCGATTA
TGGGGCTGATTGATTATCCGGGCCGCGTAATGGCAGAAAAACTGGAGTTTAACGGCCAGGATTTGCAGCGTATCTCAGAA
AAAGAGCGCCGCAACCTGGTGGGTGCCGAAGTGGCGATGATCTTCCAGGACCCGATGACCAGCCTTAACCCGTGCTACAC
CGTGGGTTTCCAGATTATGGAAGCGATTAAGGTGCATCAGGGCGGCAACAAAAGTACCCGCCGTCAGCGAGCGATTGACC
TGCTGAATCAGGTCGGTATTCCCGATCCGGCATCGCGTCTGGATGTTTACCCGCATCAGCTTTCCGGCGGCATGAGCCAG
CGCGTGATGATCGCCATGGCGATTGCCTGTCGGCCAAAACTGCTGATTGCCGATGAACCGACCACCGCGCTGGACGTGAC
CATTCAGGCGCAAATCATCGAACTACTGCTGGAGCTACAGCAGAAAGAGAACATGGCGCTGGTGTTAATTACCCATGACC
TGGCGCTGGTGGCGGAAGCGGCACATAAAATCATCGTGATGTATGCAGGCCAGGTGGTGGAAACCGGTGATGCGCACGCC
ATCTTCCATGCGCCGCGTCACCCGTATACTCAGGCATTGCTGCGTGCGCTGCCAGAATTTGCTCAGGACAAAGAACGTCT
GGCGTCGTTGCCAGGTGTCGTTCCCGGCAAGTACGACCGCCCGAACGGCTGCCTGCTTAACCCGCGCTGCCCCTATGCCA
CTGACAGATGTCGCGCTGAAGAACCGGCGCTGAATATGCTCGCTGACGGGCGTCAGTCCAAATGCCATTACCCACTTGAT
GATGCCGGGAGGCCGACACTATGA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-297)

ABC transporter (ABC_tran)

(24-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7ZT85

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

43.302

98.165

0.425
  amiE Streptococcus thermophilus LMG 18311

42.991

98.165

0.422
  amiE Streptococcus thermophilus LMD-9

42.991

98.165

0.422
  oppD Streptococcus mutans UA159

41.379

97.554

0.404