Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   SIY77_RS05880 Genome accession   NZ_CP139125
Coordinates   1168080..1168709 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain YZ22PE244     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1163080..1173709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIY77_RS05865 helD 1163322..1165376 (-) 2055 WP_001295354.1 DNA helicase IV -
  SIY77_RS05870 yccF 1165499..1165945 (+) 447 WP_001261235.1 YccF domain-containing protein -
  SIY77_RS05875 yccS 1165955..1168117 (+) 2163 WP_000875061.1 YccS family putative transporter -
  SIY77_RS05880 sxy/tfoX 1168080..1168709 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  SIY77_RS05885 sulA 1168928..1169437 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  SIY77_RS05890 ompA 1169794..1170834 (+) 1041 WP_000750416.1 porin OmpA -
  SIY77_RS05895 matP 1170910..1171362 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  SIY77_RS05900 ycbZ 1171548..1173308 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=829269 SIY77_RS05880 WP_000839153.1 1168080..1168709(-) (sxy/tfoX) [Escherichia coli strain YZ22PE244]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=829269 SIY77_RS05880 WP_000839153.1 1168080..1168709(-) (sxy/tfoX) [Escherichia coli strain YZ22PE244]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGTCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1