Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutX   Type   Machinery gene
Locus tag   R8611_RS05305 Genome accession   NZ_AP026927
Coordinates   1049503..1049967 (-) Length   154 a.a.
NCBI ID   WP_001135783.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700178     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1044503..1054967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8611_RS05285 (PC0174_10360) - 1045454..1046422 (-) 969 WP_000105360.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -
  R8611_RS05290 (PC0174_10370) pdrM 1046576..1047937 (-) 1362 WP_317647812.1 sodium-coupled multidrug efflux MATE transporter PdrM -
  R8611_RS05295 (PC0174_10380) - 1047948..1048208 (-) 261 WP_001105922.1 hypothetical protein -
  R8611_RS05300 (PC0174_10390) - 1048222..1049490 (-) 1269 WP_000924494.1 dihydroorotase -
  R8611_RS05305 (PC0174_10400) mutX 1049503..1049967 (-) 465 WP_001135783.1 8-oxo-dGTP diphosphatase Machinery gene
  R8611_RS05310 (PC0174_10410) - 1049977..1050630 (-) 654 WP_000401326.1 uracil-DNA glycosylase -
  R8611_RS05315 - 1050766..1051369 (-) 604 Protein_1055 hypothetical protein -
  R8611_RS05320 (PC0174_10440) - 1051427..1052140 (-) 714 WP_000499427.1 YjjG family noncanonical pyrimidine nucleotidase -
  R8611_RS05325 (PC0174_10450) dhaM 1052599..1052979 (-) 381 WP_000443787.1 dihydroxyacetone kinase phosphoryl donor subunit DhaM -
  R8611_RS05330 - 1052979..1053053 (-) 75 Protein_1058 dihydroxyacetone kinase subunit L -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17840.21 Da        Isoelectric Point: 4.2287

>NTDB_id=82925 R8611_RS05305 WP_001135783.1 1049503..1049967(-) (mutX) [Streptococcus pneumoniae strain PZ900700178]
MPQLATICYIDNGKELLMLHRNKKPNDVHEGKWIGVGGKLERGETPQECAVREILEETGLKAKPVLKGVITFPEFTPDLD
WYTYVFKVTEFEGDLIDCNEGTLEWVPYDEVLSKPTWEGDHTFVEWLLEDKPFFSAKFVYDGDKLLDTQVDFYE

Nucleotide


Download         Length: 465 bp        

>NTDB_id=82925 R8611_RS05305 WP_001135783.1 1049503..1049967(-) (mutX) [Streptococcus pneumoniae strain PZ900700178]
ATGCCTCAGTTAGCGACGATTTGCTACATTGATAATGGGAAAGAACTGCTCATGCTCCATCGTAATAAGAAACCCAATGA
TGTCCATGAAGGGAAATGGATTGGTGTGGGTGGTAAGCTAGAGAGAGGAGAGACGCCCCAGGAATGCGCGGTGCGTGAAA
TCCTTGAAGAAACAGGGCTCAAAGCCAAGCCAGTTCTAAAAGGTGTCATCACTTTTCCTGAATTTACACCAGATTTAGAC
TGGTACACCTATGTTTTTAAGGTGACGGAGTTTGAGGGCGACTTGATTGACTGCAATGAGGGGACGCTAGAATGGGTTCC
CTATGATGAGGTTTTGAGCAAGCCGACTTGGGAAGGTGACCACACCTTTGTTGAGTGGCTTTTAGAGGATAAACCCTTCT
TTTCAGCCAAGTTTGTTTATGATGGGGATAAATTGTTGGATACCCAAGTTGATTTCTATGAATAA

Domains

Predicted by InterProScan.

NUDIX domain (NUDIX)

(2-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutX Streptococcus pneumoniae R6

99.351

100

0.994

Multiple sequence alignment