Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   R9806_RS30045 Genome accession   NZ_CP139044
Coordinates   6916790..6917467 (-) Length   225 a.a.
NCBI ID   WP_223773931.1    Uniprot ID   -
Organism   Streptomyces sp. KN37     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6911790..6922467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R9806_RS30020 (R9806_30020) - 6912544..6913137 (+) 594 WP_223773936.1 TIGR03086 family metal-binding protein -
  R9806_RS30025 (R9806_30025) - 6913302..6914039 (+) 738 WP_320591318.1 CPBP family intramembrane glutamic endopeptidase -
  R9806_RS30030 (R9806_30030) - 6914053..6914391 (+) 339 WP_223773934.1 PadR family transcriptional regulator -
  R9806_RS30035 (R9806_30035) - 6914388..6915146 (+) 759 WP_320591319.1 hypothetical protein -
  R9806_RS30040 (R9806_30040) - 6915251..6916699 (-) 1449 WP_320591320.1 peptidoglycan D,D-transpeptidase FtsI family protein -
  R9806_RS30045 (R9806_30045) vraR 6916790..6917467 (-) 678 WP_223773931.1 response regulator transcription factor Regulator
  R9806_RS30050 (R9806_30050) - 6917464..6918720 (-) 1257 WP_320591321.1 sensor histidine kinase -
  R9806_RS30055 (R9806_30055) - 6918717..6919748 (-) 1032 WP_320591322.1 hypothetical protein -
  R9806_RS30060 (R9806_30060) - 6919825..6920301 (-) 477 WP_320591323.1 GNAT family N-acetyltransferase -
  R9806_RS30065 (R9806_30065) - 6920305..6921078 (-) 774 WP_223773928.1 IclR family transcriptional regulator -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 23905.54 Da        Isoelectric Point: 6.2676

>NTDB_id=829245 R9806_RS30045 WP_223773931.1 6916790..6917467(-) (vraR) [Streptomyces sp. KN37]
MTTAPSPESPTLRVVLADDERMVRTALRAILSAEAGIEVVGEAATGAEAVSVVRELEPDVVLMDVRMPEIDGIRATEQIL
RTMPRPPRIVVVTTFENDAYVYEALRAGAAGFLLKRADADSLVQAVRIVAHSDSLLFPSAVRALAAEHGRARPAPPAWVA
RLTGRENEVLRLMAAGLTNAEIAGRMGVGAATVKTHVASVLAKTGARDRTQAVIAAYEAGFMKTD

Nucleotide


Download         Length: 678 bp        

>NTDB_id=829245 R9806_RS30045 WP_223773931.1 6916790..6917467(-) (vraR) [Streptomyces sp. KN37]
ATGACGACCGCACCCTCCCCCGAGAGCCCCACCCTGCGGGTCGTCCTCGCCGACGACGAGCGCATGGTGCGTACCGCCCT
GCGCGCGATCCTCTCCGCCGAGGCGGGCATCGAGGTCGTCGGCGAGGCGGCGACCGGTGCCGAGGCGGTGTCGGTCGTGC
GGGAGCTTGAGCCCGACGTGGTCCTGATGGACGTCCGCATGCCGGAGATCGACGGCATCCGCGCCACCGAGCAGATCCTG
CGGACGATGCCGCGACCGCCGCGCATCGTGGTCGTGACGACCTTCGAGAACGACGCGTACGTGTACGAGGCGCTGCGCGC
GGGCGCCGCCGGGTTCCTGCTCAAGCGGGCGGACGCGGACTCGCTCGTCCAGGCCGTGCGCATCGTCGCGCACAGCGACT
CGCTGCTCTTCCCCTCGGCCGTGCGCGCCCTGGCCGCCGAGCACGGACGCGCCAGGCCCGCACCGCCCGCCTGGGTGGCG
CGGCTCACCGGCCGGGAGAACGAGGTGCTGCGGCTGATGGCGGCGGGGCTGACCAACGCGGAGATCGCCGGACGGATGGG
GGTGGGCGCGGCGACGGTGAAGACGCACGTGGCGTCCGTCCTCGCCAAGACGGGCGCGCGGGACCGCACGCAGGCGGTGA
TCGCGGCGTACGAGGCCGGTTTCATGAAGACCGACTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(162-215)

Response regulator receiver domain (Response_reg)

(14-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.498

94.667

0.364