Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   R9806_RS26350 Genome accession   NZ_CP139044
Coordinates   6140206..6141939 (-) Length   577 a.a.
NCBI ID   WP_320591024.1    Uniprot ID   -
Organism   Streptomyces sp. KN37     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6135206..6146939
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R9806_RS26340 (R9806_26340) - 6136990..6138258 (+) 1269 WP_320591023.1 RNA polymerase sigma factor -
  R9806_RS26345 (R9806_26345) rcrQ 6138284..6140194 (-) 1911 WP_414079977.1 ABC transporter ATP-binding protein Regulator
  R9806_RS26350 (R9806_26350) rcrP 6140206..6141939 (-) 1734 WP_320591024.1 ABC transporter ATP-binding protein Regulator
  R9806_RS26355 (R9806_26355) - 6142110..6143537 (-) 1428 WP_320591025.1 FGGY family carbohydrate kinase -
  R9806_RS26360 (R9806_26360) - 6143620..6143922 (-) 303 WP_223779025.1 YtxH domain-containing protein -
  R9806_RS26380 (R9806_26380) - 6144660..6145745 (-) 1086 WP_223774458.1 YihY/virulence factor BrkB family protein -
  R9806_RS26385 (R9806_26385) - 6145914..6146312 (+) 399 WP_223774457.1 TOBE domain-containing protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62458.58 Da        Isoelectric Point: 5.5941

>NTDB_id=829237 R9806_RS26350 WP_320591024.1 6140206..6141939(-) (rcrP) [Streptomyces sp. KN37]
MLIRLLRTYLRPYKKPIALLVLLQFLQTCAALYLPTLNADIIDNGVVEGDTGYILTFGGVMIAVTIVQMVCNIGAVFYGA
RTASALGRDVRAAVFDRVQSFSAREMGQFGAPSLITRTTNDVQQVQMLVLMSFTLMVTAPIMCVGGIVMALGQDIPLSGV
LVAVVPVLGISVSLIVRRLRPLFRTMQVRLDTVNRVLREQITGNRVIRAFVRDAYEKERFRGANADLTDVSLGSGRLLAL
MFPIVMTVVNVSSVAVVWFGARRIDGGDMKIGALTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIEEVLDTESSVVP
PAEPVRELRSHGHLEIRGAGFRYPGAEEPVLRAIDLVARPGETTAVIGSTGSGKSTLLGLVPRLIDATEGQVLVGGVDVA
SVESALLARTVSLVPQKPYLFAGTVATNLRYGNPDATDEELWHALEVAQAKEFVAGLAEGLDAPISQGGTNVSGGQRQRL
SIARTLVQRPEIYLFDDSFSALDYATDAALRGALSRETAEATVVIVAQRVSTIRDADRIVVLDEGRVVGSGRHHELMESN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=829237 R9806_RS26350 WP_320591024.1 6140206..6141939(-) (rcrP) [Streptomyces sp. KN37]
GTGCTCATACGACTCCTGCGGACGTACCTGCGCCCGTACAAGAAACCGATCGCCCTGCTGGTGCTGTTGCAGTTCCTCCA
GACCTGCGCCGCGCTCTATCTGCCCACACTGAACGCCGACATCATCGACAACGGCGTCGTCGAGGGGGACACGGGTTACA
TCCTCACCTTCGGCGGCGTCATGATCGCCGTCACCATCGTGCAGATGGTCTGCAACATCGGCGCCGTCTTCTACGGCGCG
CGCACCGCCTCCGCCCTCGGGCGCGACGTCCGGGCCGCCGTCTTCGACCGCGTGCAGTCCTTCTCCGCACGCGAGATGGG
CCAGTTCGGCGCCCCCTCGCTGATCACGCGGACCACCAACGACGTCCAGCAGGTGCAGATGCTGGTCCTGATGTCGTTCA
CGCTGATGGTCACCGCGCCCATCATGTGCGTCGGCGGCATCGTGATGGCGCTCGGCCAGGACATCCCCCTCTCCGGGGTG
CTGGTCGCCGTCGTACCCGTCCTCGGGATCAGCGTCAGCCTCATCGTGCGGCGCCTGCGTCCGCTGTTCCGCACCATGCA
GGTGCGGCTCGACACGGTCAACCGCGTGCTGCGCGAGCAGATCACCGGCAACCGCGTCATCCGCGCCTTCGTCCGGGACG
CGTACGAGAAGGAGCGCTTCCGCGGGGCCAACGCCGACCTGACCGACGTCTCTCTCGGCAGCGGCAGGCTGCTCGCGCTG
ATGTTCCCGATCGTCATGACCGTCGTGAACGTCTCGTCGGTCGCCGTCGTCTGGTTCGGCGCGCGGCGCATCGACGGCGG
CGACATGAAGATCGGCGCGCTCACCGCGTTCCTCGCCTATCTCATGCAGATCGTGATGTCGGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCCCGCGCGGAGGTCTGTGCCGAGCGCATCGAGGAGGTCCTGGACACCGAGTCCAGCGTGGTGCCC
CCGGCCGAACCGGTGCGCGAGCTGCGCAGCCACGGCCACCTGGAGATCCGGGGCGCGGGCTTCCGCTACCCCGGCGCCGA
GGAGCCCGTCCTGAGGGCCATCGACCTGGTCGCCCGCCCCGGTGAGACGACCGCCGTGATCGGCTCGACGGGCAGCGGCA
AGTCGACGCTGCTCGGCCTCGTGCCGCGGCTGATCGACGCGACCGAGGGGCAGGTCCTGGTCGGCGGCGTGGACGTGGCC
AGCGTCGAGTCCGCGCTGCTCGCGCGGACCGTGAGCCTGGTCCCGCAGAAGCCGTACCTCTTCGCGGGCACGGTCGCGAC
CAACCTGCGGTACGGCAATCCGGACGCGACGGACGAGGAGCTCTGGCACGCCCTGGAGGTCGCCCAGGCCAAGGAGTTCG
TGGCGGGCCTGGCGGAGGGGCTCGACGCGCCGATCTCGCAGGGCGGCACCAACGTCTCCGGCGGCCAGCGCCAACGCCTG
TCCATCGCGCGCACGCTGGTGCAGCGCCCGGAGATCTACCTCTTCGACGACTCGTTCTCCGCGCTCGACTACGCCACCGA
CGCGGCGCTGCGCGGCGCGCTGTCCCGGGAGACCGCCGAGGCGACCGTCGTCATCGTCGCGCAGCGCGTCTCGACCATCA
GGGACGCCGACCGCATCGTGGTCCTCGACGAGGGCCGGGTCGTGGGCAGCGGCCGCCATCACGAGCTGATGGAGAGCAAT
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCGTAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(352-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

38.929

97.054

0.378