Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   R9806_RS26345 Genome accession   NZ_CP139044
Coordinates   6138284..6140194 (-) Length   636 a.a.
NCBI ID   WP_414079977.1    Uniprot ID   -
Organism   Streptomyces sp. KN37     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6133284..6145194
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R9806_RS26330 (R9806_26330) - 6133647..6134909 (+) 1263 WP_223774510.1 NAD(P)/FAD-dependent oxidoreductase -
  R9806_RS26335 (R9806_26335) dnaG 6134964..6136862 (+) 1899 WP_223774509.1 DNA primase -
  R9806_RS26340 (R9806_26340) - 6136990..6138258 (+) 1269 WP_320591023.1 RNA polymerase sigma factor -
  R9806_RS26345 (R9806_26345) rcrQ 6138284..6140194 (-) 1911 WP_414079977.1 ABC transporter ATP-binding protein Regulator
  R9806_RS26350 (R9806_26350) rcrP 6140206..6141939 (-) 1734 WP_320591024.1 ABC transporter ATP-binding protein Regulator
  R9806_RS26355 (R9806_26355) - 6142110..6143537 (-) 1428 WP_320591025.1 FGGY family carbohydrate kinase -
  R9806_RS26360 (R9806_26360) - 6143620..6143922 (-) 303 WP_223779025.1 YtxH domain-containing protein -

Sequence

Protein


Download         Length: 636 a.a.        Molecular weight: 68672.01 Da        Isoelectric Point: 4.9819

>NTDB_id=829236 R9806_RS26345 WP_414079977.1 6138284..6140194(-) (rcrQ) [Streptomyces sp. KN37]
MGGPMMGPDSRSMDFKGSGKRLLAQFRPERTTMYGMIAAGILSVALSVLGPKILGRATDLIFAGIIGRDMPADLTKEQVI
EGLRDKGDGGMADMLTGVDFTPGEGIDFGAMGEVLLLALGTFLAAGLLLAVATRLSNRAINRTVFRLRGDVQEKLSRLPL
SYFDKRQRGEVLSRATNDIDNINQTLQQTMGQLINSLLTIIGVLVMMFWVSPLLALVALVTVPLSFFVAMKVGKRSQPQF
VQQWKTTGKLNAHIEEMYTGHALVKVFGRQEESAKAFAEQNDQLYDAGFRAQFISGAMQPLMFFISNLNYVLVAVVGGLR
VASGSLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERVFEILDAEEQEADPVPGERPAKLSGRVEMEHVSFRY
AKDKPLIEDLSLVVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGRITLDGVDIAGMSRDELRAGIGMVLQDTWLFGGT
IAENIAYGAAKEVTREEVEEAARAAHADRFVRTLPDGYDTVIDDDGTGVSAGEKQLITIARAFLSDPVILVLDEATSSVD
TRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADTILVMENGAIVEQGTHDALLAAGGAYARLYAAQFAEAVAEVD

Nucleotide


Download         Length: 1911 bp        

>NTDB_id=829236 R9806_RS26345 WP_414079977.1 6138284..6140194(-) (rcrQ) [Streptomyces sp. KN37]
ATGGGTGGACCGATGATGGGCCCCGACTCCCGGTCGATGGACTTCAAGGGCTCCGGCAAGCGGCTGCTCGCGCAGTTCAG
GCCGGAGCGCACCACGATGTACGGGATGATCGCGGCCGGAATCCTGAGCGTCGCGCTCTCCGTCCTCGGCCCGAAGATCC
TCGGCAGGGCGACCGACCTGATCTTCGCGGGGATCATCGGCCGTGACATGCCCGCGGACCTGACGAAGGAACAGGTGATC
GAGGGCCTGCGCGACAAGGGCGACGGCGGCATGGCCGACATGCTCACCGGCGTCGACTTCACGCCGGGCGAGGGCATCGA
CTTCGGCGCGATGGGCGAGGTCCTGCTGCTCGCGCTCGGCACGTTCCTCGCGGCCGGCCTGCTGCTGGCCGTGGCGACCC
GGCTCTCCAACCGCGCCATCAACCGGACCGTCTTCCGGTTGCGTGGCGACGTACAGGAGAAGCTGTCGCGGCTTCCGCTG
TCGTACTTCGACAAGCGGCAGCGCGGCGAGGTGCTGAGCCGTGCCACGAACGACATCGACAACATCAACCAGACGCTCCA
GCAGACGATGGGCCAGCTCATCAACTCGCTGCTGACGATCATCGGCGTGCTGGTCATGATGTTCTGGGTGTCGCCGCTGC
TCGCGCTGGTGGCGCTGGTCACCGTGCCGCTGTCGTTCTTCGTGGCGATGAAGGTCGGCAAGCGGTCGCAGCCGCAGTTC
GTGCAGCAGTGGAAGACCACCGGCAAGCTGAACGCGCACATCGAGGAGATGTACACCGGGCACGCCCTGGTGAAGGTGTT
CGGCCGGCAGGAGGAGTCGGCGAAGGCGTTCGCCGAGCAGAACGACCAGTTGTACGACGCCGGGTTCAGGGCCCAGTTCA
TCAGCGGCGCCATGCAGCCGCTGATGTTCTTCATCTCGAACCTGAACTATGTCCTGGTGGCCGTGGTGGGCGGGCTGCGG
GTCGCGTCGGGCTCGCTGTCCATCGGTGACGTGCAGGCCTTCATCCAGTACTCGCGGCAGTTCTCGATGCCGCTCACGCA
GGTCGCCTCGATGGCGAACCTCGTGCAGTCGGGCGTCGCGTCCGCCGAGCGGGTCTTCGAGATCCTCGACGCCGAGGAAC
AGGAGGCCGACCCGGTGCCGGGCGAGCGTCCCGCGAAGCTCAGCGGGCGGGTCGAGATGGAGCACGTCTCCTTCCGCTAC
GCCAAGGACAAGCCGCTCATCGAGGACCTGTCCCTGGTCGTGGAGCCCGGCCACACCGTCGCCATCGTCGGGCCGACCGG
CGCGGGCAAGACGACGCTGGTCAACCTGCTCATGCGGTTCTACGAGGTGACGGGCGGGCGCATCACGCTGGACGGCGTCG
ACATCGCCGGCATGTCGCGGGACGAACTGCGGGCCGGGATCGGCATGGTCCTCCAGGACACCTGGCTCTTCGGCGGCACC
ATCGCGGAGAACATCGCGTACGGCGCGGCGAAGGAGGTCACGCGCGAGGAGGTCGAGGAGGCGGCGCGCGCGGCCCACGC
GGACCGTTTCGTGCGTACTCTGCCCGACGGGTACGACACGGTGATCGACGACGACGGCACGGGCGTGAGCGCGGGCGAGA
AGCAGCTCATCACCATCGCGCGGGCGTTCCTGTCCGATCCGGTGATCCTGGTGCTCGACGAGGCGACGAGTTCGGTCGAC
ACCCGCACGGAGGTGCTCATCCAGAAGGCGATGGCACGCCTCGCGCACGGGCGTACTTCTTTCGTCATCGCGCACCGGCT
GTCCACGATCCGTGACGCCGACACGATTTTGGTGATGGAGAACGGAGCGATCGTCGAGCAGGGGACGCACGATGCCCTGC
TGGCGGCGGGCGGGGCGTATGCGCGGTTGTACGCGGCGCAGTTCGCGGAGGCGGTGGCGGAGGTCGACTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(408-557)

ABC transporter transmembrane region (ABC_membrane)

(37-345)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

41.318

97.799

0.404