Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   R9806_RS21130 Genome accession   NZ_CP139044
Coordinates   4945937..4946602 (-) Length   221 a.a.
NCBI ID   WP_414079943.1    Uniprot ID   -
Organism   Streptomyces sp. KN37     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4940937..4951602
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R9806_RS21110 (R9806_21110) - 4941076..4942440 (-) 1365 WP_320590600.1 GNAT family N-acetyltransferase -
  R9806_RS21115 (R9806_21115) - 4942513..4943697 (-) 1185 WP_320590601.1 NAD(P)-binding protein -
  R9806_RS21120 (R9806_21120) - 4943880..4944593 (+) 714 WP_320590602.1 pentapeptide repeat-containing protein -
  R9806_RS21125 (R9806_21125) - 4945395..4945907 (-) 513 WP_223775359.1 hypothetical protein -
  R9806_RS21130 (R9806_21130) vraR 4945937..4946602 (-) 666 WP_414079943.1 response regulator Regulator
  R9806_RS21135 (R9806_21135) - 4946599..4947783 (-) 1185 WP_320590603.1 sensor histidine kinase -
  R9806_RS21140 (R9806_21140) - 4948138..4948695 (+) 558 WP_223775357.1 GlcG/HbpS family heme-binding protein -
  R9806_RS21145 (R9806_21145) - 4948789..4950234 (+) 1446 WP_320590604.1 M1 family metallopeptidase -
  R9806_RS21150 (R9806_21150) - 4950242..4950751 (-) 510 WP_320590605.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 23545.14 Da        Isoelectric Point: 7.3613

>NTDB_id=829222 R9806_RS21130 WP_414079943.1 4945937..4946602(-) (vraR) [Streptomyces sp. KN37]
MNVMNAPRRPVRQPVRLLVCDDHVVVRAGLLALLGSAPDIEVVGEAGTGEEAVALAAKLTPDVVLMDLQLGEGIDGVEAT
RRITSPSPGAPPHVLVLTTYDTDADITRAIEAGATGYLLKAERPEELFSAIHAASQGRTALSPPVASRVMARMRAPRPTL
TDRERDILGQLSRGLGNREIARALFISEATVKTHLGRIYDKLGVDTRAGAVAVAKEQRLLP

Nucleotide


Download         Length: 666 bp        

>NTDB_id=829222 R9806_RS21130 WP_414079943.1 4945937..4946602(-) (vraR) [Streptomyces sp. KN37]
ATGAACGTCATGAACGCACCTCGCCGGCCGGTACGTCAGCCGGTACGTCTCCTGGTCTGCGACGACCACGTGGTCGTACG
CGCGGGCCTGCTCGCCCTGCTCGGCAGCGCGCCGGACATCGAGGTGGTCGGCGAGGCGGGCACGGGCGAGGAGGCGGTCG
CCCTGGCCGCCAAGCTGACGCCGGACGTGGTCCTGATGGACCTCCAGCTGGGCGAGGGCATCGACGGCGTGGAGGCGACG
CGACGCATCACCTCACCCTCTCCCGGCGCCCCGCCCCACGTCCTGGTCCTGACGACCTACGACACGGACGCGGACATCAC
GCGGGCGATCGAGGCGGGCGCGACGGGGTACCTGCTGAAGGCGGAACGCCCCGAGGAGCTGTTCTCCGCGATCCACGCCG
CGTCCCAGGGACGCACCGCGCTCTCGCCCCCGGTCGCCTCCCGCGTCATGGCCCGCATGCGGGCCCCGAGGCCCACCCTC
ACGGACCGGGAACGCGACATCCTCGGCCAGCTCTCGCGGGGCCTCGGCAACCGTGAGATCGCCCGCGCCCTGTTCATCAG
CGAGGCCACGGTCAAGACCCACTTGGGCCGGATCTACGACAAGCTGGGCGTCGACACGCGAGCGGGTGCGGTGGCGGTGG
CGAAGGAGCAGCGGCTGCTGCCGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(18-131)

Bacterial regulatory proteins, luxR family (GerE)

(159-214)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

39.524

95.023

0.376