Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   R9806_RS17100 Genome accession   NZ_CP139044
Coordinates   4072620..4074029 (+) Length   469 a.a.
NCBI ID   WP_223776021.1    Uniprot ID   -
Organism   Streptomyces sp. KN37     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4067620..4079029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R9806_RS17080 (R9806_17080) - 4067730..4068554 (-) 825 WP_223776023.1 sugar phosphate isomerase/epimerase family protein -
  R9806_RS17085 (R9806_17085) - 4068613..4069548 (-) 936 WP_223776022.1 Ppx/GppA phosphatase family protein -
  R9806_RS17090 (R9806_17090) - 4069887..4070678 (+) 792 WP_414080062.1 hypothetical protein -
  R9806_RS17095 (R9806_17095) - 4070682..4072430 (-) 1749 WP_320590286.1 BACON domain-containing protein -
  R9806_RS17100 (R9806_17100) radA/sms 4072620..4074029 (+) 1410 WP_223776021.1 DNA repair protein RadA Machinery gene
  R9806_RS17105 (R9806_17105) disA 4074109..4075233 (+) 1125 WP_223776020.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  R9806_RS17110 (R9806_17110) - 4075278..4076087 (-) 810 WP_223776019.1 hypothetical protein -
  R9806_RS17115 (R9806_17115) - 4076261..4076947 (+) 687 WP_320590287.1 phosphatase PAP2 family protein -
  R9806_RS17120 (R9806_17120) vraR 4076976..4077638 (-) 663 WP_223779139.1 response regulator transcription factor Regulator

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49658.75 Da        Isoelectric Point: 7.7225

>NTDB_id=829209 R9806_RS17100 WP_223776021.1 4072620..4074029(+) (radA/sms) [Streptomyces sp. KN37]
MAARTKTAKDRPSYRCTECGWQTAKWLGRCPECQAWGTVEEYGAPAVRTTAPGRVTSSAVPIGEVDGRQATARSTGVPEL
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVSAKAASDEHRTLYVTGEESASQVRLRADRIGAIDDHLYLAAETDLSAVL
GHLDAVKPSLLVLDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLQF
EGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRITALGKRDIYSATVGGVKLSEPAADLAVALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPTDPGRVPAGMKVIEVADMGDALRVLPRSRRREAPREAEERR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=829209 R9806_RS17100 WP_223776021.1 4072620..4074029(+) (radA/sms) [Streptomyces sp. KN37]
ATGGCTGCCCGTACGAAAACCGCTAAGGACAGGCCGTCCTACCGCTGCACCGAGTGCGGCTGGCAGACGGCCAAGTGGCT
CGGCCGCTGCCCAGAGTGCCAGGCCTGGGGGACGGTCGAGGAGTACGGCGCGCCCGCGGTCCGCACCACCGCCCCCGGCC
GCGTCACCTCCTCCGCCGTCCCGATCGGCGAGGTCGACGGCCGCCAGGCCACTGCCCGCTCCACCGGCGTCCCCGAGCTG
GACCGGGTCCTCGGCGGTGGCCTGGTCCCCGGCGCCGTCGTGCTGCTCGCGGGCGAGCCGGGCGTCGGCAAGTCCACCCT
GCTGCTCGACGTCTCGGCGAAGGCGGCCAGCGACGAGCACCGCACCCTCTATGTGACCGGCGAGGAGTCGGCGAGCCAGG
TCCGGCTGCGAGCCGACCGCATCGGCGCCATCGACGACCACCTGTATCTGGCCGCGGAGACCGATCTGTCCGCCGTCCTC
GGTCACTTGGACGCGGTCAAGCCCTCGCTCCTGGTCCTGGACTCCGTGCAGACGGTCGCCTCGCCCGAGATCGACGGTGC
GCCCGGCGGCATGGCGCAGGTCCGCGAGGTCGCGGGCGCCCTGATCCGCGCCTCCAAGGAGCGCGGCATGTCCACCCTCC
TGGTGGGCCACGTCACCAAGGACGGCGCCATCGCGGGCCCCCGCCTCCTGGAGCATCTCGTCGACGTGGTGCTCCAGTTC
GAGGGCGACCGGCACGCGCGCCTGCGCCTGGTCCGCGGCGTCAAGAACCGGTACGGCACCACGGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGCATCACCGGCCTCGCCGACCCCAGCGGACTCTTCCTGACCCGTCGTGCCGAGCCCGTCCCCG
GCACCTGCCTCACCGTCACCCTGGAGGGCCGCCGCCCCCTGGTCGCCGAGGTCCAGGCGCTCACGGTCGACTCGCAGATC
CCGAGCCCCCGGCGCACGACCTCCGGCCTGGAGACCTCCCGCGTCTCGATGATGCTGGCCGTCCTGGAGCAGCGCGGCCG
GATCACCGCGCTCGGCAAGCGGGACATCTACAGCGCGACGGTCGGCGGCGTGAAGCTCTCCGAGCCCGCCGCGGACCTCG
CCGTCGCCCTCGCGCTCGCCAGCGCGGCGAGCGACACCCCGCTCCCGAAGAATCTCGTGGCGATCGGGGAAGTGGGCCTG
GCGGGCGAGGTCAGACGGGTCACGGGCGTCCAGCGCAGACTGGCCGAGGCGCACCGGCTCGGCTTCACCCACGCCCTCGT
ACCGACCGATCCCGGCAGAGTCCCCGCCGGTATGAAGGTCATCGAAGTCGCCGACATGGGGGACGCCCTGCGCGTCCTTC
CGCGATCCCGTCGCCGAGAGGCCCCACGGGAGGCGGAGGAGCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(78-222)

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

44.15

96.588

0.426
  radA Streptococcus mitis SK321

43.488

96.588

0.42
  radA Streptococcus mitis NCTC 12261

43.488

96.588

0.42
  radA Streptococcus pneumoniae Rx1

43.556

95.949

0.418
  radA Streptococcus pneumoniae TIGR4

43.556

95.949

0.418
  radA Streptococcus pneumoniae D39

43.556

95.949

0.418
  radA Streptococcus pneumoniae R6

43.556

95.949

0.418