Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   R9806_RS02430 Genome accession   NZ_CP139044
Coordinates   693994..696333 (+) Length   779 a.a.
NCBI ID   WP_320589018.1    Uniprot ID   -
Organism   Streptomyces sp. KN37     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 688994..701333
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R9806_RS02410 (R9806_02410) - 689798..690946 (-) 1149 WP_320589016.1 prephenate dehydrogenase -
  R9806_RS02415 (R9806_02415) hppD 691116..692237 (+) 1122 WP_320589017.1 4-hydroxyphenylpyruvate dioxygenase -
  R9806_RS02420 (R9806_02420) - 692218..693354 (+) 1137 WP_223778392.1 alpha-hydroxy acid oxidase -
  R9806_RS02425 (R9806_02425) - 693382..693837 (-) 456 WP_223778391.1 cold-shock protein -
  R9806_RS02430 (R9806_02430) uvrA 693994..696333 (+) 2340 WP_320589018.1 excinuclease ABC subunit UvrA Machinery gene
  R9806_RS02435 (R9806_02435) - 696870..698045 (+) 1176 WP_320589019.1 hypothetical protein -
  R9806_RS02440 (R9806_02440) - 698256..698495 (+) 240 WP_320589020.1 hypothetical protein -
  R9806_RS02445 (R9806_02445) - 699021..699992 (-) 972 WP_320589021.1 hypothetical protein -

Sequence

Protein


Download         Length: 779 a.a.        Molecular weight: 83403.46 Da        Isoelectric Point: 6.8978

>NTDB_id=829174 R9806_RS02430 WP_320589018.1 693994..696333(+) (uvrA) [Streptomyces sp. KN37]
MHSPHDPFVRVRGAREHNLRGVDVDIPRDVLAVFTGVSGSGKSSLAFGTIYAEAQRRYFESVAPYARRLIHQVGAPKVGE
ITGLPPAVSLQQRRSSPTSRSSVGTVTTLSNSLRMLFSRAGSYPEGAERLDSDAFSPNTAAGACAACHGLGRVHRTTEEL
LVPDPSLSIREGAIAAWPGAWQGKNLRDVLDTLGYDVDRPWRELDAADREWILFTDEQPVVTVHPVREAGRIQRPYQGTY
MSARRYVMKTFADSKSQTLRAKAERFLASAPCAACGGSRLRPEALAVTFAGRTIAELAALPLSELADVLAGAADTSETAR
VLTEDLLARIATVTELGLGYLSPDRATPTLSAGELQRLRLATQLRSGLFGVVYVLDEPSAGLHPADTEALLTVLDRLKAA
GNSVFVVEHHLDVVRHADWLVDVGPHAGEHGGRVLHSGPVAALEGVEESATARFLFGREPAPVREVRAPRGWLKVGPVTR
HNLRAVTAKVPLGAFTAVTGVSGSGKSTLVGEITEELPGVGRLVRVDQKPIGRTPRSNLATYTGLFDVVRKVFAATEAAK
ERGYGVGRFSFNVAGGRCETCQGEGFVSVELLFLPSTYAPCPDCAGARYNPATLEVTYHGKNIAEVLDLTVEAAAEFFAD
TPSVVRSLRTLLDVGLGYLRLGQPATELSGGEAQRIKLASELQRARRGHTLYLLDEPTTGLHPADVEVLTHRLHELVDAG
NSVVVVEHDMAVVAGADWVIDLGPDGGEGGGRIVAAGPPRDVARAQDSRTAPYLRHALD

Nucleotide


Download         Length: 2340 bp        

>NTDB_id=829174 R9806_RS02430 WP_320589018.1 693994..696333(+) (uvrA) [Streptomyces sp. KN37]
ATGCACAGCCCCCACGATCCGTTCGTACGCGTCCGGGGTGCCCGGGAGCACAACCTCCGGGGCGTCGACGTGGACATCCC
GCGAGACGTGCTCGCGGTGTTCACCGGCGTCTCCGGCTCGGGGAAGTCCTCGCTCGCCTTCGGGACGATCTACGCCGAGG
CGCAGCGGCGCTACTTCGAGTCCGTCGCCCCGTACGCCCGGCGACTCATCCACCAGGTGGGCGCCCCGAAGGTCGGTGAG
ATCACGGGCCTGCCGCCCGCCGTCTCGCTCCAGCAGCGCCGCTCGTCGCCGACCTCGCGCTCCTCCGTCGGCACGGTGAC
CACCCTGTCCAACTCCCTGCGGATGCTCTTCTCCCGCGCCGGCAGCTACCCCGAGGGCGCCGAGCGGCTCGACTCGGACG
CCTTCTCGCCGAACACCGCGGCCGGCGCGTGCGCTGCGTGCCATGGTCTGGGCCGTGTCCACCGGACCACCGAGGAGCTG
CTGGTCCCCGACCCCTCGCTGTCCATCCGCGAGGGCGCGATCGCCGCCTGGCCGGGCGCCTGGCAGGGCAAGAACCTCCG
GGACGTCCTGGACACCCTCGGCTACGACGTGGACCGGCCGTGGCGCGAGCTGGACGCCGCCGACCGCGAGTGGATCCTCT
TCACGGACGAGCAGCCGGTGGTGACCGTGCACCCGGTGCGCGAGGCGGGCCGCATCCAACGCCCGTACCAGGGCACGTAC
ATGAGCGCCCGGCGCTATGTCATGAAGACCTTCGCGGACTCCAAGAGCCAGACGCTGCGGGCCAAGGCGGAACGGTTCCT
GGCGAGCGCTCCCTGCGCGGCGTGCGGTGGGAGCAGGCTGCGTCCGGAGGCGCTGGCGGTCACGTTCGCGGGCCGGACGA
TCGCCGAGCTGGCCGCGCTCCCCCTGTCCGAGCTGGCGGACGTCCTCGCGGGCGCCGCGGACACGTCCGAGACGGCGCGC
GTACTGACCGAGGACCTGTTGGCCCGCATCGCGACCGTCACCGAGCTGGGCCTCGGCTATCTCAGTCCGGACCGTGCCAC
GCCCACCCTGTCGGCGGGAGAGCTCCAGCGCCTGCGGCTCGCGACGCAGCTCCGCTCGGGCCTGTTCGGGGTGGTGTACG
TGCTGGACGAGCCGTCGGCGGGGCTCCATCCGGCGGACACGGAGGCCTTGCTGACGGTTCTCGACCGCCTCAAGGCCGCC
GGCAACTCCGTCTTCGTCGTGGAGCACCATCTCGACGTCGTACGCCACGCGGACTGGCTCGTCGACGTCGGCCCCCACGC
GGGCGAGCACGGCGGCCGGGTGCTGCACAGCGGCCCGGTCGCCGCGCTCGAAGGCGTCGAGGAGTCGGCGACCGCCCGCT
TCCTCTTCGGCCGCGAGCCCGCTCCGGTACGCGAAGTGCGCGCGCCTCGCGGTTGGTTGAAGGTCGGCCCGGTCACCCGG
CACAATCTGCGCGCGGTGACGGCGAAGGTCCCGCTCGGCGCCTTCACGGCGGTCACGGGCGTCTCCGGCTCGGGCAAGTC
CACGCTCGTCGGCGAGATCACCGAGGAACTGCCGGGCGTCGGCCGGCTGGTCCGCGTCGACCAGAAGCCGATCGGCCGCA
CGCCGCGCTCCAACCTCGCCACCTACACGGGCCTCTTCGACGTCGTACGCAAGGTCTTCGCGGCCACGGAGGCGGCGAAG
GAGCGGGGTTACGGCGTCGGCCGGTTCTCGTTCAACGTCGCGGGCGGGCGGTGCGAGACCTGTCAGGGCGAGGGGTTCGT
CAGCGTCGAGCTGCTCTTCCTGCCGAGCACGTACGCGCCCTGCCCGGACTGTGCGGGCGCCCGCTACAACCCGGCGACCC
TCGAGGTGACGTACCACGGGAAGAACATCGCCGAGGTGCTCGACCTGACGGTGGAGGCGGCCGCGGAGTTCTTCGCGGAC
ACGCCGTCCGTCGTCCGCAGCCTGCGCACGCTCCTCGACGTCGGTCTCGGCTATCTGCGGCTCGGGCAGCCGGCCACGGA
GCTGTCGGGCGGGGAGGCCCAGCGGATCAAGCTGGCGAGCGAGTTGCAGCGGGCTCGGCGCGGGCACACGCTCTATCTCC
TCGACGAGCCGACGACGGGGCTGCACCCCGCCGACGTGGAGGTGCTCACGCACCGCCTGCACGAACTGGTCGACGCCGGG
AACTCGGTGGTCGTCGTCGAGCACGACATGGCGGTGGTGGCGGGCGCGGACTGGGTCATCGACCTGGGCCCGGACGGTGG
CGAAGGCGGCGGCCGGATCGTGGCGGCGGGCCCGCCGAGGGACGTGGCGCGGGCGCAGGACAGCCGCACAGCGCCGTACT
TGCGCCACGCGCTCGACTAA

Domains

Predicted by InterProScan.

UvrA DNA-binding domain (UvrA_DNA-bind)

(159-265)

ABC transporter (ABC_tran)

(483-698)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

42.609

88.575

0.377
  uvrA Streptococcus pneumoniae TIGR4

42.609

88.575

0.377
  uvrA Streptococcus pneumoniae D39

42.609

88.575

0.377