Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   H7677_RS09630 Genome accession   NZ_AP023391
Coordinates   1955165..1956532 (-) Length   455 a.a.
NCBI ID   WP_024383973.1    Uniprot ID   -
Organism   Streptococcus suis strain DAT299     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1936272..1957522 1955165..1956532 within 0


Gene organization within MGE regions


Location: 1936272..1957522
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7677_RS09500 (DAT299_18410) rsmA 1936272..1937144 (-) 873 WP_024398382.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -
  H7677_RS09505 (DAT299_18420) - 1937164..1937694 (-) 531 WP_172059778.1 DUF1697 domain-containing protein -
  H7677_RS09510 (DAT299_18430) - 1937708..1937965 (-) 258 WP_172059776.1 Txe/YoeB family addiction module toxin -
  H7677_RS09515 (DAT299_18440) - 1937967..1938227 (-) 261 WP_002939010.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  H7677_RS09520 (DAT299_18450) - 1938303..1938758 (-) 456 WP_015647468.1 8-oxo-dGTP diphosphatase -
  H7677_RS09525 (DAT299_18460) - 1938762..1939130 (-) 369 WP_024383247.1 hypothetical protein -
  H7677_RS09530 (DAT299_18470) rnmV 1939123..1939692 (-) 570 WP_105095029.1 ribonuclease M5 -
  H7677_RS09535 (DAT299_18480) - 1939676..1940458 (-) 783 WP_172059772.1 TatD family hydrolase -
  H7677_RS09540 (DAT299_18490) rpmH 1940565..1940702 (-) 138 WP_002939016.1 50S ribosomal protein L34 -
  H7677_RS09545 (DAT299_18500) jag 1940870..1941865 (-) 996 WP_172059770.1 RNA-binding cell elongation regulator Jag/EloR -
  H7677_RS09550 (DAT299_18510) - 1941885..1942697 (-) 813 WP_184493570.1 YidC/Oxa1 family membrane protein insertase -
  H7677_RS09555 (DAT299_18520) rnpA 1942681..1943040 (-) 360 WP_004194560.1 ribonuclease P protein component -
  H7677_RS09560 (DAT299_18530) argH 1943111..1944505 (-) 1395 WP_184493572.1 argininosuccinate lyase -
  H7677_RS09565 (DAT299_18540) - 1944519..1945712 (-) 1194 WP_184493574.1 argininosuccinate synthase -
  H7677_RS09570 (DAT299_18550) - 1945905..1946453 (-) 549 WP_184493576.1 hypothetical protein -
  H7677_RS09575 (DAT299_18560) - 1946523..1947050 (-) 528 WP_024384455.1 transcription repressor NadR -
  H7677_RS09580 (DAT299_18570) - 1947156..1948031 (-) 876 WP_184493578.1 VOC family protein -
  H7677_RS09585 (DAT299_18580) - 1948152..1948667 (+) 516 WP_184493580.1 NUDIX hydrolase -
  H7677_RS09590 (DAT299_18590) - 1948641..1948931 (-) 291 WP_184493582.1 hypothetical protein -
  H7677_RS09595 (DAT299_18600) - 1948992..1949354 (+) 363 WP_172013842.1 MerR family transcriptional regulator -
  H7677_RS09600 (DAT299_18610) gltX 1949395..1950849 (-) 1455 WP_184493584.1 glutamate--tRNA ligase -
  H7677_RS09605 (DAT299_18620) - 1950921..1952201 (-) 1281 WP_172059760.1 MFS transporter -
  H7677_RS09610 (DAT299_18630) - 1952293..1952952 (-) 660 WP_172059758.1 LiaF transmembrane domain-containing protein -
  H7677_RS09615 (DAT299_18640) - 1952957..1953403 (-) 447 WP_024381190.1 LytTR family DNA-binding domain-containing protein -
  H7677_RS09620 (DAT299_18650) - 1953581..1954339 (-) 759 WP_184493586.1 TIGR00266 family protein -
  H7677_RS09625 (DAT299_18660) - 1954547..1955041 (-) 495 WP_105095020.1 beta-class carbonic anhydrase -
  H7677_RS09630 (DAT299_18670) radA 1955165..1956532 (-) 1368 WP_024383973.1 DNA repair protein RadA Machinery gene
  H7677_RS09635 (DAT299_18680) - 1956539..1957072 (-) 534 WP_184493588.1 histidine phosphatase family protein -
  H7677_RS09640 (DAT299_18690) - 1957079..1957522 (-) 444 WP_023371714.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49872.37 Da        Isoelectric Point: 5.8779

>NTDB_id=82915 H7677_RS09630 WP_024383973.1 1955165..1956532(-) (radA) [Streptococcus suis strain DAT299]
MIIAKKKTTFVCQSCEYHSPKYLGRCPNCGSWSSFVEEVEVAEVKNERVSLTGEKTRPMKLDEVSSIQVARTKTNMEEFN
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSTIGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSIRTE
IEKIKPDFLIIDSIQTIMSPDISSVQGSVSQVREVTNELMQIAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEG
ERQHTFRILRAVKNRFGSTNEIGIFEMQSQGLVEVLNPSEVFLEERLDGATGSAIVVTMEGTRPILAEVQALVTPTMFGN
AKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVALASSYKDKPTNPQECFIGEIGLTGE
IRRVNRIEQRINEAAKLGFTKVYAPKNSLTGIKVPKEITVIGVTTIGEVLQKVFN

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=82915 H7677_RS09630 WP_024383973.1 1955165..1956532(-) (radA) [Streptococcus suis strain DAT299]
ATCATCATCGCTAAGAAAAAAACAACCTTTGTCTGTCAATCCTGCGAGTACCACTCGCCTAAGTATCTGGGCCGTTGCCC
CAACTGTGGCTCCTGGTCTAGCTTTGTCGAGGAAGTGGAAGTCGCTGAAGTTAAGAACGAGCGGGTCAGTCTGACAGGTG
AGAAGACCCGTCCGATGAAGCTCGATGAAGTTTCCTCCATTCAAGTGGCTCGCACCAAGACCAATATGGAGGAGTTTAAC
CGCGTCCTCGGTGGCGGCGTGGTGCCGGGAAGTCTGGTCCTGATCGGAGGTGATCCAGGGATTGGCAAGTCCACCTTGCT
CCTGCAAGTATCCACTCAGCTGTCTACAATTGGCACGGTCCTCTATGTGTCGGGGGAGGAATCTGCCCAGCAGATTAAGC
TCCGTGCCGAGCGTTTGGGCGACATTGACAGCGAGTTCTATCTCTATGCGGAGACCAATATGCAGAGCATTCGGACCGAG
ATTGAGAAAATCAAGCCAGATTTCCTGATTATCGACTCCATCCAGACCATTATGAGCCCTGACATCTCCAGCGTGCAAGG
CTCTGTCAGTCAGGTCCGTGAAGTGACCAATGAACTCATGCAGATTGCCAAGACCAACAACATCGCAACCTTCATCGTCG
GCCACATGACCAAGGAAGGTACCCTGGCTGGACCGCGGACCTTGGAGCATATGGTAGACACCGTTCTTTATTTTGAGGGC
GAGCGTCAACACACCTTCCGTATCTTGCGGGCAGTCAAAAACCGCTTTGGCTCCACCAACGAAATCGGTATTTTTGAAAT
GCAGTCGCAGGGCTTGGTCGAAGTCCTCAATCCCAGCGAGGTCTTTCTGGAAGAGCGTCTGGACGGAGCGACTGGCTCGG
CTATTGTCGTGACCATGGAGGGTACCCGCCCAATCCTTGCGGAAGTGCAGGCTCTGGTGACCCCGACCATGTTTGGCAAT
GCCAAGCGGACCACGACAGGATTGGACTTCAACCGTGCCAGCTTGATTATGGCGGTTTTGGAAAAACGGGCAGGCCTGCT
CCTCCAAAACCAAGACGCCTACCTCAAATCAGCAGGCGGTGTCAAACTGGATGAGCCAGCTATTGACCTGGCAGTCGCAG
TTGCCCTTGCTTCCAGTTACAAGGACAAGCCAACCAACCCACAAGAGTGCTTTATAGGCGAAATCGGTCTGACAGGGGAA
ATCCGCCGCGTCAATCGGATTGAACAACGGATTAACGAAGCCGCTAAATTGGGCTTTACCAAGGTCTATGCCCCCAAAAA
TTCCCTGACAGGTATCAAGGTGCCCAAGGAAATCACCGTTATCGGCGTGACCACCATTGGCGAAGTCTTGCAGAAAGTAT
TCAACTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(363-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)

AAA domain (AAA_25)

(64-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

91.372

99.341

0.908
  radA Streptococcus pneumoniae Rx1

91.15

99.341

0.905
  radA Streptococcus pneumoniae D39

91.15

99.341

0.905
  radA Streptococcus pneumoniae R6

91.15

99.341

0.905
  radA Streptococcus pneumoniae TIGR4

91.15

99.341

0.905
  radA Streptococcus mitis SK321

90.929

99.341

0.903
  radA Bacillus subtilis subsp. subtilis str. 168

62.693

99.56

0.624

Multiple sequence alignment