Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   SH576_RS09970 Genome accession   NZ_CP139036
Coordinates   2109623..2109952 (+) Length   109 a.a.
NCBI ID   WP_260552276.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain MAS152     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2104623..2114952
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SH576_RS09955 (SH576_09960) - 2105352..2106296 (+) 945 WP_015502635.1 NAD-dependent epimerase/dehydratase family protein -
  SH576_RS09960 (SH576_09965) - 2106397..2107422 (+) 1026 WP_023093916.1 glycosyltransferase family 4 protein -
  SH576_RS09965 (SH576_09970) - 2107435..2109432 (+) 1998 WP_021265047.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  SH576_RS09970 (SH576_09975) comEA/comE1 2109623..2109952 (+) 330 WP_260552276.1 ComEA family DNA-binding protein Machinery gene
  SH576_RS09980 (SH576_09985) - 2110169..2111365 (-) 1197 WP_003104588.1 amino acid aminotransferase -
  SH576_RS09985 (SH576_09990) uvrB 2111553..2113565 (+) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11401.33 Da        Isoelectric Point: 8.0459

>NTDB_id=829013 SH576_RS09970 WP_260552276.1 2109623..2109952(+) (comEA/comE1) [Pseudomonas aeruginosa strain MAS152]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGFNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=829013 SH576_RS09970 WP_260552276.1 2109623..2109952(+) (comEA/comE1) [Pseudomonas aeruginosa strain MAS152]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGATG
AGGCCGCCCTGATACGGGGGTTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAGGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

39.423

95.413

0.376